cassava13144.valid.m1 (Manihot esculenta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 cassava13144.valid.m1 T24693_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava13144.valid.m1 PUF 660 694
cassava13144.valid.m1 PUF 696 730
cassava13144.valid.m1 PUF 732 766
cassava13144.valid.m1 PUF 768 802
cassava13144.valid.m1 PUF 804 838
cassava13144.valid.m1 PUF 841 875
cassava13144.valid.m1 PUF 877 911
cassava13144.valid.m1 PUF 924 953

Links

Other PUF family RBPs
Other Manihot esculenta RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.971
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.967
30143.m001164 Ricinus communis 30143.m001164 N 0.964
PK00601.1 Cannabis sativa PK00601.1 N 0.942
ppa000626m Prunus persica ppa000626m N 0.942
MDP0000314338 Malus x domestica MDP0000314338 N 0.920
MDP0000776183 Malus x domestica MDP0000776183 N 0.917
30143.m001162 Ricinus communis 30143.m001162 N 0.909
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.906
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.903
mgf015234m Mimulus guttatus mgf015234m N 0.887
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.873
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.873
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.865
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.865
ppa000627m Prunus persica ppa000627m N 0.865
PK21390.1 Cannabis sativa PK21390.1 N 0.865
SB03G039600 Sorghum bicolor Sb03g039600 N 0.862
MDP0000319167 Malus x domestica MDP0000319167 N 0.862
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.860
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.860
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.859
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.859
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.855
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.855
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.855
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.855
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.855
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.855
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.853
SB09G001090 Sorghum bicolor Sb09g001090 N 0.853
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.853
mgf015734m Mimulus guttatus mgf015734m N 0.851
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.849
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.848
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.847
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.847
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.846
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.846
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.845
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.841
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.841
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.841
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.819
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.808
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.808
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.808
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.804
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.804
PK01617.1 Cannabis sativa PK01617.1 N 0.801
ppa000731m Prunus persica ppa000731m N 0.801
29595.m000292 Ricinus communis 29595.m000292 N 0.801
MDP0000191652 Malus x domestica MDP0000191652 N 0.800
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.786
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.786
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.785
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.783
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.776
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.775
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.773
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.773
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.772
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.768
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.768
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.764
MDP0000176743 Malus x domestica MDP0000176743 N 0.764
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.762
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.755
SB04G037410 Sorghum bicolor Sb04g037410 N 0.754
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.753
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.752
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.750
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.746
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.743
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.737
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.736
MDP0000119814 Malus x domestica MDP0000119814 N 0.736
mgf011401m Mimulus guttatus mgf011401m N 0.717