CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9HMK2_POPTR
(
Populus trichocarpa
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
POPTR_0008s05850
T24426_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0008s05850.1
PUF
662
696
EIAGHVVEFSADQYGSRFIQQKLETATAEENNMVF
POPTR_0008s05850.1
PUF
698
732
EIMPQALSLMTDVFGNYVIQKFFEHGSASQIRELA
POPTR_0008s05850.1
PUF
734
768
QLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTKMV
POPTR_0008s05850.1
PUF
770
804
ELNGHILRCVRDQNGNHVIQKCIECVPEDAIQFIV
POPTR_0008s05850.1
PUF
806
840
TFYDQVVTLSTHPYGCRVIQRVLEHCHDTKTQRIM
POPTR_0008s05850.1
PUF
843
877
EILQSVCMLAQDQYGNYVVQHVLEHGKPHERSAII
POPTR_0008s05850.1
PUF
879
913
KLTGQIVQMSQQKFASNVIEKCLTFGTPAERQALV
POPTR_0008s05850.1
PUF
926
955
LQAMMKDQFANYVVQKVLETCDDQQLGLIL
Links
Other
PUF
family RBPs
Other
Populus trichocarpa
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9HTG3_POPTR
Populus trichocarpa
POPTR_0010s20870
N
0.975
cassava13144.valid.m1
Manihot esculenta
cassava13144.valid.m1
N
0.967
30143.m001164
Ricinus communis
30143.m001164
N
0.960
ppa000626m
Prunus persica
ppa000626m
N
0.942
PK00601.1
Cannabis sativa
PK00601.1
N
0.931
MDP0000314338
Malus x domestica
MDP0000314338
N
0.924
MDP0000776183
Malus x domestica
MDP0000776183
N
0.917
GSVIVG00016507001
Vitis vinifera
GSVIVG00016507001
N
0.906
30143.m001162
Ricinus communis
30143.m001162
N
0.906
Cucsa.165170
Cucumis sativus
Cucsa.165170
N
0.902
mgf015234m
Mimulus guttatus
mgf015234m
N
0.880
GSVIVG00024918001
Vitis vinifera
GSVIVG00024918001
N
0.877
LOC_Os01g62650
Oryza sativa
LOC_Os01g62650
N
0.876
SB03G039600
Sorghum bicolor
Sb03g039600
N
0.865
PK21390.1
Cannabis sativa
PK21390.1
N
0.865
Glyma15g04060.1
Glycine max
Glyma15g04060.1
N
0.858
ppa000627m
Prunus persica
ppa000627m
N
0.855
cassava30948.valid.m1
Manihot esculenta
cassava30948.valid.m1
N
0.855
cassava30949.valid.m1
Manihot esculenta
cassava30949.valid.m1
N
0.855
BGIOSIBCE017275
Oryza indica
BGIOSIBCE017275
N
0.853
LOC_Os05g01910
Oryza sativa
LOC_Os05g01910
N
0.853
Glyma12g06430.1
Glycine max
Glyma12g06430.1
N
0.851
Glyma12g06450.1
Glycine max
Glyma12g06450.1
N
0.851
cassava19436.valid.m1
Manihot esculenta
cassava19436.valid.m1
N
0.851
MDP0000319167
Malus x domestica
MDP0000319167
N
0.851
Cucsa.138830
Cucumis sativus
Cucsa.138830
N
0.851
SB09G001090
Sorghum bicolor
Sb09g001090
N
0.849
Glyma11g14550.1
Glycine max
Glyma11g14550.1
N
0.848
Glyma11g14530.1
Glycine max
Glyma11g14530.1
N
0.848
BRADI2G39240
Brachypodium distachyon
BRADI2G39240
N
0.845
BRADI2G39410
Brachypodium distachyon
BRADI2G39410
N
0.845
GRMZM2G012964
Zea mays
GRMZM2G012964
N
0.845
Glyma11g14500.1
Glycine max
Glyma11g14500.1
N
0.844
Medtr4g084270
Medicago truncatula
Medtr4g084270
N
0.844
cassava19437.valid.m1
Manihot esculenta
cassava19437.valid.m1
N
0.844
Medtr2g117180
Medicago truncatula
Medtr2g117180
N
0.844
LOC_Os01g74030
Oryza sativa
LOC_Os01g74030
N
0.842
BGIOSIBCE005171
Oryza indica
BGIOSIBCE005171
N
0.842
GRMZM2G042623
Zea mays
GRMZM2G042623
N
0.842
mgf015734m
Mimulus guttatus
mgf015734m
N
0.840
B9HPE1_POPTR
Populus trichocarpa
POPTR_0009s03980
N
0.837
B9GJ97_POPTR
Populus trichocarpa
POPTR_0001s25020
N
0.837
Medtr5g087730
Medicago truncatula
Medtr5g087730
N
0.830
APUM1
Arabidopsis thaliana
AT2G29200-TAIR-G
N
0.808
PK01617.1
Cannabis sativa
PK01617.1
N
0.798
scaffold_4100004.1
Arabidopsis lyrata
scaffold_4100004.1
N
0.797
XM_002879157.1
Arabidopsis lyrata
fgenesh2_kg.4__893__AT2G29140.1
N
0.797
XM_002880988.1
Arabidopsis lyrata
fgenesh2_kg.4__898__AT2G29200.1
N
0.797
ppa000731m
Prunus persica
ppa000731m
N
0.797
APUM3
Arabidopsis thaliana
AT2G29140-TAIR-G
N
0.793
APUM2
Arabidopsis thaliana
AT2G29190-TAIR-G
N
0.793
29595.m000292
Ricinus communis
29595.m000292
N
0.793
MDP0000191652
Malus x domestica
MDP0000191652
N
0.793
cassava33553.m1
Manihot esculenta
cassava33553.m1
N
0.790
gw1.2.45.1
Selaginella moellendorfii
gw1.2.45.1
N
0.785
Glyma10g35290.1
Glycine max
Glyma10g35290.1
N
0.780
Medtr1g120450
Medicago truncatula
Medtr1g120450
N
0.780
e_gw1.96.1.1
Physcomitrella patens
e_gw1.96.1.1
N
0.779
estExt_Genewise1.C_960051
Physcomitrella patens
estExt_Genewise1.C_960051
N
0.776
Glyma20g32230.1
Glycine max
Glyma20g32230.1
N
0.776
XM_002311043.1
Populus trichocarpa
POPTR_0008s03630
N
0.772
Cucsa.308530
Cucumis sativus
Cucsa.308530
N
0.772
estExt_Genewise1.C_350182
Physcomitrella patens
estExt_Genewise1.C_350182
N
0.764
MDP0000176743
Malus x domestica
MDP0000176743
N
0.761
cassava10774.m1
Manihot esculenta
cassava10774.m1
N
0.758
B9HUI2_POPTR
Populus trichocarpa
POPTR_0010s23250
N
0.757
APUM4
Arabidopsis thaliana
AT3G10360-TAIR-G
N
0.754
LOC_Os02g57390
Oryza sativa
LOC_Os02g57390
N
0.754
e_gw1.2.1396.1
Selaginella moellendorfii
e_gw1.2.1396.1
N
0.753
e_gw1.7.1189.1
Selaginella moellendorfii
e_gw1.7.1189.1
N
0.752
SB04G037410
Sorghum bicolor
Sb04g037410
N
0.750
XM_002884744.1
Arabidopsis lyrata
scaffold_301182.1
N
0.746
GSVIVG00016236001
Vitis vinifera
GSVIVG00016236001
N
0.744
GRMZM2G123537
Zea mays
GRMZM2G123537
N
0.743
PDK_20s1515321g002
Phoenix dactylifera
PDK_20s1515321g002
N
0.740
MDP0000119814
Malus x domestica
MDP0000119814
N
0.736
BRADI3G55540
Brachypodium distachyon
BRADI3G55540
N
0.736
mgf011401m
Mimulus guttatus
mgf011401m
N
0.728