30143.m001164 (Ricinus communis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 30143.m001164 T24682_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30143.m001164 PUF 663 697
30143.m001164 PUF 699 733
30143.m001164 PUF 735 769
30143.m001164 PUF 771 805
30143.m001164 PUF 807 842
30143.m001164 PUF 844 878
30143.m001164 PUF 880 914
30143.m001164 PUF 927 956

Links

Other PUF family RBPs
Other Ricinus communis RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.971
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.964
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.960
PK00601.1 Cannabis sativa PK00601.1 N 0.957
ppa000626m Prunus persica ppa000626m N 0.942
30143.m001162 Ricinus communis 30143.m001162 N 0.942
MDP0000314338 Malus x domestica MDP0000314338 N 0.931
MDP0000776183 Malus x domestica MDP0000776183 N 0.931
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.924
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.913
mgf015234m Mimulus guttatus mgf015234m N 0.891
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.884
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.884
SB03G039600 Sorghum bicolor Sb03g039600 N 0.870
PK21390.1 Cannabis sativa PK21390.1 N 0.870
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.866
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.866
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.864
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.864
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.862
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.862
SB09G001090 Sorghum bicolor Sb09g001090 N 0.860
ppa000627m Prunus persica ppa000627m N 0.859
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.859
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.859
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.859
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.857
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.857
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.857
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.857
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.857
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.855
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.855
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.853
MDP0000319167 Malus x domestica MDP0000319167 N 0.851
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.851
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.851
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.851
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.848
mgf015734m Mimulus guttatus mgf015734m N 0.848
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.848
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.848
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.844
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.822
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.812
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.812
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.812
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.808
MDP0000191652 Malus x domestica MDP0000191652 N 0.804
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.804
ppa000731m Prunus persica ppa000731m N 0.798
PK01617.1 Cannabis sativa PK01617.1 N 0.798
29595.m000292 Ricinus communis 29595.m000292 N 0.794
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.791
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.786
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.783
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.781
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.780
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.780
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.773
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.773
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.769
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.769
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.758
MDP0000176743 Malus x domestica MDP0000176743 N 0.758
SB04G037410 Sorghum bicolor Sb04g037410 N 0.758
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.755
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.755
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.755
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.755
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.755
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.754
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.753
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.747
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.747
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.745
MDP0000119814 Malus x domestica MDP0000119814 N 0.733
mgf011401m Mimulus guttatus mgf011401m N 0.722