GSVIVG00016507001 (Vitis vinifera)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 GSVIVG00016507001 T24370_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00016507001 PUF 539 573
GSVIVT00016507001 PUF 575 609
GSVIVT00016507001 PUF 611 646
GSVIVT00016507001 PUF 647 681
GSVIVT00016507001 PUF 683 718
GSVIVT00016507001 PUF 720 754
GSVIVT00016507001 PUF 756 790
GSVIVT00016507001 PUF 803 832

Links

Other PUF family RBPs
Other Vitis vinifera RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30143.m001164 Ricinus communis 30143.m001164 N 0.924
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.917
ppa000626m Prunus persica ppa000626m N 0.913
PK00601.1 Cannabis sativa PK00601.1 N 0.913
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.906
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.903
MDP0000776183 Malus x domestica MDP0000776183 N 0.899
MDP0000314338 Malus x domestica MDP0000314338 N 0.895
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.888
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.884
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.877
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.877
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.877
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.877
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.874
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.874
30143.m001162 Ricinus communis 30143.m001162 N 0.874
PK21390.1 Cannabis sativa PK21390.1 N 0.870
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.870
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.870
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.866
ppa000627m Prunus persica ppa000627m N 0.863
SB03G039600 Sorghum bicolor Sb03g039600 N 0.863
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.859
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.859
MDP0000319167 Malus x domestica MDP0000319167 N 0.859
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.859
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.856
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.856
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.854
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.854
mgf015234m Mimulus guttatus mgf015234m N 0.852
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.852
mgf015734m Mimulus guttatus mgf015734m N 0.852
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.847
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.847
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.846
SB09G001090 Sorghum bicolor Sb09g001090 N 0.846
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.846
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.846
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.845
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.843
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.830
ppa000731m Prunus persica ppa000731m N 0.823
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.819
PK01617.1 Cannabis sativa PK01617.1 N 0.819
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.819
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.819
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.819
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.816
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.812
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.805
MDP0000191652 Malus x domestica MDP0000191652 N 0.801
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.801
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.798
29595.m000292 Ricinus communis 29595.m000292 N 0.794
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.794
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.794
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.788
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.787
MDP0000176743 Malus x domestica MDP0000176743 N 0.783
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.783
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.783
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.783
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.780
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.780
SB04G037410 Sorghum bicolor Sb04g037410 N 0.776
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.773
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.773
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.769
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.769
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.765
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.762
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.762
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.760
MDP0000119814 Malus x domestica MDP0000119814 N 0.755
mgf011401m Mimulus guttatus mgf011401m N 0.747
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.735