BGIOSIBCE017275 (Oryza indica)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 BGIOSIBCE017275 T24044_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE017275 PUF 541 575
BGIOSIBCE017275 PUF 577 611
BGIOSIBCE017275 PUF 613 647
BGIOSIBCE017275 PUF 649 683
BGIOSIBCE017275 PUF 685 719
BGIOSIBCE017275 PUF 722 756
BGIOSIBCE017275 PUF 758 792
BGIOSIBCE017275 PUF 801 834

Links

Other PUF family RBPs
Other Oryza indica RBPs

82 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 1.000
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.961
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.961
SB09G001090 Sorghum bicolor Sb09g001090 N 0.953
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.953
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.953
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.950
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.946
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.871
30143.m001164 Ricinus communis 30143.m001164 N 0.864
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.860
ppa000626m Prunus persica ppa000626m N 0.857
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.857
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.854
MDP0000314338 Malus x domestica MDP0000314338 N 0.853
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.853
MDP0000776183 Malus x domestica MDP0000776183 N 0.846
PK00601.1 Cannabis sativa PK00601.1 N 0.846
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.842
mgf015234m Mimulus guttatus mgf015234m N 0.832
SB03G039600 Sorghum bicolor Sb03g039600 N 0.832
30143.m001162 Ricinus communis 30143.m001162 N 0.825
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.821
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.814
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.814
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.811
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.811
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.811
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.811
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.810
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.806
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.806
PK21390.1 Cannabis sativa PK21390.1 N 0.806
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.803
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.803
MDP0000319167 Malus x domestica MDP0000319167 N 0.803
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.799
ppa000627m Prunus persica ppa000627m N 0.799
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.796
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.796
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.796
mgf015734m Mimulus guttatus mgf015734m N 0.789
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.786
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.779
ppa000731m Prunus persica ppa000731m N 0.775
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.775
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.775
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.771
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.771
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.771
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.768
SB04G037410 Sorghum bicolor Sb04g037410 N 0.768
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.767
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.764
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.764
29595.m000292 Ricinus communis 29595.m000292 N 0.764
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.762
PK01617.1 Cannabis sativa PK01617.1 N 0.762
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.762
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.761
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.761
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.758
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.757
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.757
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.754
MDP0000191652 Malus x domestica MDP0000191652 N 0.753
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.751
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.743
MDP0000176743 Malus x domestica MDP0000176743 N 0.743
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.737
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.736
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.735
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.730
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.729
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.729
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.715
mgf011401m Mimulus guttatus mgf011401m N 0.714
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.712
30169.m006300 Ricinus communis 30169.m006300 N 0.712
MDP0000119814 Malus x domestica MDP0000119814 N 0.711
MDP0000277305 Malus x domestica MDP0000277305 N 0.708
ppa000898m Prunus persica ppa000898m N 0.706