GSVIVG00024918001 (Vitis vinifera)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 GSVIVG00024918001 T24372_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00024918001 PUF 25 59
GSVIVT00024918001 PUF 61 94
GSVIVT00024918001 PUF 97 131
GSVIVT00024918001 PUF 133 167
GSVIVT00024918001 PUF 169 204
GSVIVT00024918001 PUF 206 240
GSVIVT00024918001 PUF 242 276
GSVIVT00024918001 PUF 289 318

Links

Other PUF family RBPs
Other Vitis vinifera RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.924
PK21390.1 Cannabis sativa PK21390.1 N 0.924
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.924
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.920
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.920
ppa000627m Prunus persica ppa000627m N 0.920
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.920
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.920
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.916
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.916
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.913
MDP0000319167 Malus x domestica MDP0000319167 N 0.909
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.906
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.906
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.906
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.902
mgf015734m Mimulus guttatus mgf015734m N 0.895
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.891
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.891
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.888
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.884
30143.m001164 Ricinus communis 30143.m001164 N 0.884
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.880
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.877
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.876
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.876
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.873
PK00601.1 Cannabis sativa PK00601.1 N 0.873
ppa000626m Prunus persica ppa000626m N 0.873
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.873
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.870
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.866
MDP0000314338 Malus x domestica MDP0000314338 N 0.866
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.862
SB03G039600 Sorghum bicolor Sb03g039600 N 0.862
MDP0000776183 Malus x domestica MDP0000776183 N 0.862
MDP0000191652 Malus x domestica MDP0000191652 N 0.862
30143.m001162 Ricinus communis 30143.m001162 N 0.848
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.844
mgf015234m Mimulus guttatus mgf015234m N 0.837
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.814
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.814
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.814
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.814
SB09G001090 Sorghum bicolor Sb09g001090 N 0.806
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.806
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.804
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.804
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.803
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.797
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.795
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.794
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.793
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.786
ppa000731m Prunus persica ppa000731m N 0.783
29595.m000292 Ricinus communis 29595.m000292 N 0.783
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.780
PK01617.1 Cannabis sativa PK01617.1 N 0.780
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.764
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.762
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.761
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.758
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.755
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.755
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.755
MDP0000176743 Malus x domestica MDP0000176743 N 0.751
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.751
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.750
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.749
SB04G037410 Sorghum bicolor Sb04g037410 N 0.747
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.747
mgf011401m Mimulus guttatus mgf011401m N 0.744
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.744
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.740
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.734
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.726
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.718
MDP0000119814 Malus x domestica MDP0000119814 N 0.715