GRMZM2G012964 (Zea mays)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 GRMZM2G012964 T24939_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G012964_P01 PUF 535 569
GRMZM2G012964_P01 PUF 571 605
GRMZM2G012964_P01 PUF 607 641
GRMZM2G012964_P01 PUF 643 677
GRMZM2G012964_P01 PUF 679 713
GRMZM2G012964_P01 PUF 716 750
GRMZM2G012964_P01 PUF 752 785
GRMZM2G012964_P01 PUF 796 828

Links

Other PUF family RBPs
Other Zea mays RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB09G001090 Sorghum bicolor Sb09g001090 N 0.996
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.975
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.964
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.964
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.950
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.950
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.946
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.946
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.860
30143.m001164 Ricinus communis 30143.m001164 N 0.857
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.852
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.849
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.849
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.845
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.843
ppa000626m Prunus persica ppa000626m N 0.842
MDP0000314338 Malus x domestica MDP0000314338 N 0.842
PK00601.1 Cannabis sativa PK00601.1 N 0.839
SB03G039600 Sorghum bicolor Sb03g039600 N 0.838
MDP0000776183 Malus x domestica MDP0000776183 N 0.835
mgf015234m Mimulus guttatus mgf015234m N 0.820
30143.m001162 Ricinus communis 30143.m001162 N 0.814
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.810
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.803
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.803
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.802
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.799
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.799
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.799
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.799
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.795
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.795
ppa000627m Prunus persica ppa000627m N 0.791
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.791
PK21390.1 Cannabis sativa PK21390.1 N 0.791
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.791
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.791
MDP0000319167 Malus x domestica MDP0000319167 N 0.791
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.791
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.789
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.788
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.781
mgf015734m Mimulus guttatus mgf015734m N 0.777
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.771
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.767
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.767
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.763
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.763
ppa000731m Prunus persica ppa000731m N 0.763
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.756
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.755
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.754
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.753
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.753
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.753
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.750
PK01617.1 Cannabis sativa PK01617.1 N 0.750
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.746
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.746
SB04G037410 Sorghum bicolor Sb04g037410 N 0.746
MDP0000191652 Malus x domestica MDP0000191652 N 0.745
29595.m000292 Ricinus communis 29595.m000292 N 0.742
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.742
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.739
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.738
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.738
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.735
MDP0000176743 Malus x domestica MDP0000176743 N 0.735
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.732
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.729
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.728
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.723
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.720
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.718
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.717
mgf011401m Mimulus guttatus mgf011401m N 0.713
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.704
MDP0000119814 Malus x domestica MDP0000119814 N 0.703