Glyma12g06450.1 (Glycine max)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Glyma12g06450.1 T24890_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma12g06450.1 PUF 683 717
Glyma12g06450.1 PUF 719 752
Glyma12g06450.1 PUF 755 789
Glyma12g06450.1 PUF 791 825
Glyma12g06450.1 PUF 827 862
Glyma12g06450.1 PUF 864 898
Glyma12g06450.1 PUF 900 934
Glyma12g06450.1 PUF 947 976

Links

Other PUF family RBPs
Other Glycine max RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.993
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.989
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.985
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.978
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.949
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.942
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.938
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.931
ppa000627m Prunus persica ppa000627m N 0.931
PK21390.1 Cannabis sativa PK21390.1 N 0.927
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.924
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.924
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.913
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.913
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.913
MDP0000319167 Malus x domestica MDP0000319167 N 0.906
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.902
mgf015734m Mimulus guttatus mgf015734m N 0.895
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.877
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.877
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.876
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.873
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.873
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.873
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.873
MDP0000191652 Malus x domestica MDP0000191652 N 0.869
30143.m001164 Ricinus communis 30143.m001164 N 0.866
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.866
ppa000626m Prunus persica ppa000626m N 0.862
PK00601.1 Cannabis sativa PK00601.1 N 0.862
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.862
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.859
SB03G039600 Sorghum bicolor Sb03g039600 N 0.859
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.851
MDP0000776183 Malus x domestica MDP0000776183 N 0.848
MDP0000314338 Malus x domestica MDP0000314338 N 0.848
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.844
30143.m001162 Ricinus communis 30143.m001162 N 0.826
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.826
mgf015234m Mimulus guttatus mgf015234m N 0.815
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.814
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.814
SB09G001090 Sorghum bicolor Sb09g001090 N 0.806
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.806
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.806
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.804
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.804
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.803
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.799
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.797
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.787
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.779
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.777
ppa000731m Prunus persica ppa000731m N 0.776
PK01617.1 Cannabis sativa PK01617.1 N 0.773
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.772
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.764
29595.m000292 Ricinus communis 29595.m000292 N 0.764
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.762
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.755
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.751
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.747
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.746
mgf011401m Mimulus guttatus mgf011401m N 0.744
MDP0000176743 Malus x domestica MDP0000176743 N 0.744
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.744
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.743
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.740
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.733
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.731
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.726
SB04G037410 Sorghum bicolor Sb04g037410 N 0.726
PDK_20s1515321g002 Phoenix dactylifera PDK_20s1515321g002 N 0.723
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.722
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.718
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.718
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.711
MDP0000119814 Malus x domestica MDP0000119814 N 0.704