Q5ZLH7_CHICK (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000015830 T37728_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.975
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.885
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.846
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000025475 RRM 163 223
ENSGALP00000025475 RRM 225 287
ENSGALP00000031042 RRM 163 231
ENSGALP00000031042 RRM 244 311
ENSGALP00000031042 RRM 339 401

Links

Other RRM family RBPs
Other Gallus gallus RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.876
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.837
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.975
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.995
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.829
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.995
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.842
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.731
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.896
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.905
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.808
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.751
SYNCRIP Ochotona princeps ENSOPRG00000010624 I 0.725
Syncrip Mus musculus ENSMUSG00000032423 I 0.990
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.842
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.842
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.995
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.995
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.834
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.825
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.815
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.995
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.829
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.990
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.801
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.906
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.995
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.771
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.995
AAI61702 Xenopus laevis AAI61702 I 0.876
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.842
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.995
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.901
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.805
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.842
HNRNPR Sorex araneus ENSSARG00000001732 I 0.829
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.995
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.995
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.829
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.837
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.906
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.901
AAH70529 Xenopus laevis AAH70529 I 0.965
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.980
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.995
syncripl Danio rerio ENSDARG00000026723 I 0.901
syncrip Danio rerio ENSDARG00000040184 I 0.925
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.790
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.825
LOC100070472 Equus caballus ENSECAG00000012464 I 0.840
HNRNPR Equus caballus ENSECAG00000013733 I 0.842
SYNCRIP Erinaceus europaeus ENSEEUG00000004542 I 0.770
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.842
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.995
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.847
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.995
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.842
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.995
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.834
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.829
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.842
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.746
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.804
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.990
HNRNPR Homo sapiens ENSG00000125944 I 0.842
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 1.000
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.995
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.985
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.794
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.842
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.995
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.995
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.837
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.837
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.726
SYNCRIP Homo sapiens ENSG00000135316 I 0.995
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.825
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.916
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.925
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.995
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.842
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.842
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.995
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.995
SYNCRIP Choloepus hoffmanni ENSCHOG00000012108 N 0.968