LOC708195 (Macaca mulatta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMMUG00000010038 T38875_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		1.000
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		1.000
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		1.000
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.957
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.957
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.957
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.797
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.797
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.797
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.797
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.797
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.797
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000013125 RRM 69 139
ENSMMUP00000013125 RRM 155 223
ENSMMUP00000013125 RRM 306 376
ENSMMUP00000013126 RRM 41 111
ENSMMUP00000013126 RRM 127 195
ENSMMUP00000013126 RRM 278 348
ENSMMUP00000039323 RRM 41 111
ENSMMUP00000039323 RRM 127 195
ENSMMUP00000039323 RRM 265 335
ENSMMUP00000039324 RRM 41 111
ENSMMUP00000039324 RRM 127 195
ENSMMUP00000039324 RRM 278 348

Links

Other RRM family RBPs
Other Macaca mulatta RBPs

192 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL2 Homo sapiens ENSG00000107105 D 1.000
ELAVL4 Homo sapiens ENSG00000162374 D 0.957
Rbp9 Drosophila melanogaster FBgn0010263 D 0.741
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.962
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.957
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.972
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.948
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.898
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.948
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.958
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.906
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.957
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.897
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.995
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 1.000
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.897
ELAVL2 Sus scrofa ENSSSCG00000005130 I 1.000
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.957
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.972
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.898
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.953
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.957
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.957
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 1.000
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.957
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 1.000
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 1.000
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.897
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 1.000
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.887
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.957
ELAVL2 Sorex araneus ENSSARG00000005702 I 1.000
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.957
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.957
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.784
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 1.000
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.897
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.957
AAA96943 Xenopus laevis AAA96943 I 0.991
AAA96944 Xenopus laevis AAA96944 I 0.906
AAA96945 Xenopus laevis AAA96945 I 0.953
AAH94189 Xenopus laevis AAH94189 I 0.995
AAH99348 Xenopus laevis AAH99348 I 0.953
AAI69769 Xenopus laevis AAI69769 I 0.906
AAI70539 Xenopus laevis AAI70539 I 0.995
CAA59430 Xenopus laevis CAA59430 I 0.986
CBF67567 Xenopus laevis CBF67567 I 0.953
CBU92440 Xenopus laevis CBU92440 I 0.953
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.755
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.742
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.953
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.898
Q91903 Xenopus laevis Q91903 I 0.991
GG24901 Drosophila erecta FBgn0117030 I 0.722
GH13638 Drosophila grimshawi FBgn0121114 I 0.731
GI11879 Drosophila mojavensis FBgn0134637 I 0.722
GL26299 Drosophila persimilis FBgn0163881 I 0.736
GM18380 Drosophila sechellia FBgn0173287 I 0.722
GJ13991 Drosophila virilis FBgn0201209 I 0.722
GK14865 Drosophila willistoni FBgn0216870 I 0.722
GE18193 Drosophila yakuba FBgn0235624 I 0.722
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.722
185541 Helobdella robusta 185541 I 0.000
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.723
Q91584 Xenopus laevis Q91584 I 0.906
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.719
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.957
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.957
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 1.000
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.728
elavl3 Danio rerio ENSDARG00000014420 I 0.906
elavl2 Danio rerio ENSDARG00000040732 I 0.957
elavl4 Danio rerio ENSDARG00000045639 I 0.939
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.957
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.887
Elavl2 Dipodomys ordii ENSDORG00000010437 I 1.000
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.957
ELAVL2 Equus caballus ENSECAG00000020142 I 1.000
LOC100051268 Equus caballus ENSECAG00000022284 I 0.957
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 1.000
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.957
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.897
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.746
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.769
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.774
AGAP000965 Anopheles gambiae AGAP000965 I 0.750
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.719
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.746
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.957
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.901
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.995
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.897
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.957
ELAVL2 Canis familiaris ENSCAFG00000001688 I 1.000
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.957
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.957
ELAVL2 Echinops telfairi ENSETEG00000006134 I 1.000
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.957
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.957
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.995
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.957
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.957
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.995
Elavl3 Mus musculus ENSMUSG00000003410 I 0.887
Elavl2 Mus musculus ENSMUSG00000008489 I 1.000
Elavl4 Mus musculus ENSMUSG00000028546 I 0.957
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 1.000
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.957
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.897
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.957
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 1.000
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.953
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.906
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.957
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.972
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.972
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.906
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 1.000
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.953
ELAVL3 Homo sapiens ENSG00000196361 I 0.897
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.897
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.957
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.897
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 1.000
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.957
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.957
AGAP001883 Anopheles gambiae AGAP001883 N 0.000
187316 Helobdella robusta 187316 N 0.000
GM19036 Drosophila sechellia FBgn0173939 N 0.000
GD16475 Drosophila simulans FBgn0188089 N 0.000
GG12756 Drosophila erecta FBgn0105043 N 0.000