estExt_gwp.C_5080019 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_gwp.C_5080019 T51595_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp.C_5080019 RRM 4 73

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI23372 Xenopus laevis AAI23372 N 0.845
Q8QGJ6_FUGRU Takifugu rubripes ENSTRUG00000006308 N 0.873
PPIE Tetraodon nigroviridis ENSTNIG00000016901 N 0.873
PPIE Taeniopygia guttata ENSTGUG00000001276 N 0.873
PPIE Spermophilus tridecemlineatus ENSSTOG00000010445 N 0.718
PPIE Sus scrofa ENSSSCG00000003664 N 0.859
PPIE Sorex araneus ENSSARG00000005703 N 0.859
Ppie Rattus norvegicus ENSRNOG00000014762 N 0.859
PPIE Pteropus vampyrus ENSPVAG00000002120 N 0.859
PPIE Pan troglodytes ENSPTRG00000000577 N 0.859
ENSPPYG00000001501 Pongo pygmaeus ENSPPYG00000001501 N 0.873
PPIE Oryzias latipes ENSORLG00000017469 N 0.845
PPIE Oryctolagus cuniculus ENSOCUG00000007665 N 0.859
PPIE Ornithorhynchus anatinus ENSOANG00000010003 N 0.859
Ppie Mus musculus ENSMUSG00000028651 N 0.859
PPIE Monodelphis domestica ENSMODG00000017659 N 0.873
PPIE Macaca mulatta ENSMMUG00000018869 N 0.859
PPIE Tursiops truncatus ENSTTRG00000014385 N 0.859
ISCW002449 Ixodes scapularis ISCW002449 N 0.845
XP_799104.2 Strongylocentrotus purpuratus XP_799104.2 N 0.803
XP_002168022.1 Hydra magnipapillata XP_002168022.1 N 0.803
XP_002154334.1 Hydra magnipapillata XP_002154334.1 N 0.803
XP_001175534.1 Strongylocentrotus purpuratus XP_001175534.1 N 0.803
Ame_R020475 Ailuropoda melanoleuca Ame_R020475 N 0.871
BGIBMGA003414 Bombyx mori BGIBMGA003414 N 0.845
Sjc_0059010 Schistosoma japonicum Sjc_0059010 N 0.704
estExt_gwp.C_2960041 Branchiostoma floridae estExt_gwp.C_2960041 N 1.000
estExt_gwp.C_1130042 Nematostella vectensis estExt_gwp.C_1130042 N 0.803
estExt_fgeneshTA2_pm.C_70022 Trichoplax adhaerens estExt_fgeneshTA2_pm.C_70022 N 0.732
estExt_fgenesh2_kg.C_sca_1160007 Lottia gigantea estExt_fgenesh2_kg.C_sca_1160007 N 0.845
Aqu1.226474 Amphimedon queenslandica Aqu1.226474 N 0.775
107863 Helobdella robusta 107863 N 0.746
cyn-13 Caenorhabditis elegans Y116A8C.34 N 0.718
Ppa-cyn-13 Pristionchus pacificus PPA01466 N 0.761
PHUM293600 Pediculus humanus PHUM293600 N 0.817
PPIE Myotis lucifugus ENSMLUG00000016233 N 0.859
PPIE Microcebus murinus ENSMICG00000016676 N 0.859
CRE28739 Caenorhabditis remanei CRE28739 N 0.732
CPIJ008841 Culex quinquefasciatus CPIJ008841 N 0.704
CJA08769 Caenorhabditis japonica CJA08769 N 0.718
CBN02296 Caenorhabditis brenneri CBN02296 N 0.746
CBG00420 Caenorhabditis briggsae CBG00420 N 0.718
AGAP009810 Anopheles gambiae AGAP009810 N 0.732
AAEL013948 Aedes aegypti AAEL013948 N 0.718
nasonia_NCBI_hmm78483 Nasonia vitripennis nasonia_NCBI_hmm78483 N 0.786
DGIL_AUG5s585g5t1 Acyrtosiphon pisum DGIL_AUG5s585g5t1 N 0.718
amel4_ncbi_hmm44329 Apis mellifera amel4_ncbi_hmm44329 N 0.817
amel4_ncbi_hmm1701 Tribolium castaneum amel4_ncbi_hmm1701 N 0.817
amel4_ncbi_hmm1701 Apis mellifera amel4_ncbi_hmm1701 N 0.817
WUBG_08965 Wuchereria bancrofti WUBG_08965 N 0.732
LOAG_00807 Loa loa LOAG_00807 N 0.732
CpipJ_CPIJ008841 Culex pipiens CpipJ_CPIJ008841 N 0.704
CAOG_01587 Capsaspora owczarzaki CAOG_01587 N 0.761
PPIE Anolis carolinensis ENSACAG00000002688 N 0.845
PPIE Canis familiaris ENSCAFG00000003031 N 0.859
PPIE Macropus eugenii ENSMEUG00000005090 N 0.708
PPIE Loxodonta africana ENSLAFG00000028312 N 0.859
PPIE Gorilla gorilla ENSGGOG00000015783 N 0.859
PPIE Gallus gallus ENSGALG00000013383 N 0.873
PPIE Gasterosteus aculeatus ENSGACG00000007165 N 0.831
PPIE Homo sapiens ENSG00000084072 N 0.859
PPIE Felis catus ENSFCAG00000006027 N 0.817
PPIE Erinaceus europaeus ENSEEUG00000010232 N 0.718
LOC100054282 Equus caballus ENSECAG00000024285 N 0.859
LOC100054084 Equus caballus ENSECAG00000008955 N 0.859
PPIE Dasypus novemcinctus ENSDNOG00000002404 N 0.859
ppie Danio rerio ENSDARG00000059270 N 0.845
ENSCSAVG00000006547 Ciona savignyi ENSCSAVG00000006547 N 0.789
PPIE Cavia porcellus ENSCPOG00000007365 N 0.847
LOC100400545 Callithrix jacchus ENSCJAG00000002589 N 0.859
ENSCING00000003116 Ciona intestinalis ENSCING00000003116 N 0.803
Bm1_52100 Brugia malayi Bm1_52100 N 0.732