AAH70529 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH70529 T59504_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.990
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.890
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.851
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAH70529 RRM 168 236
AAH70529 RRM 249 316
AAH70529 RRM 344 406

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.990
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.881
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.842
Syncrip Mus musculus ENSMUSG00000032423 I 0.955
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.881
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.726
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.851
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.960
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.960
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.839
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.960
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.925
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.793
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.741
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.851
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.851
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.970
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.960
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.844
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.800
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.824
SYNCRIP Ochotona princeps ENSOPRG00000010624 I 0.715
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.960
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.839
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.886
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.806
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.891
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.960
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.771
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.960
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.851
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.960
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.810
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.886
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.955
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.851
ENSRNOG00000033356 Rattus norvegicus ENSRNOG00000033356 I 0.702
HNRNPR Sorex araneus ENSSARG00000001732 I 0.839
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.960
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.839
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.842
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.891
AAI61702 Xenopus laevis AAI61702 I 0.876
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.955
syncripl Danio rerio ENSDARG00000026723 I 0.891
syncrip Danio rerio ENSDARG00000040184 I 0.925
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.770
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.800
LOC100070472 Equus caballus ENSECAG00000012464 I 0.810
HNRNPR Equus caballus ENSECAG00000013733 I 0.851
SYNCRIP Erinaceus europaeus ENSEEUG00000004542 I 0.735
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.814
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.960
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.851
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.960
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.851
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.960
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.851
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.960
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.844
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.839
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.851
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.756
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.955
HNRNPR Homo sapiens ENSG00000125944 I 0.851
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.965
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.960
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.950
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.799
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.851
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.960
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.960
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.847
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.842
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.726
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.960
SYNCRIP Homo sapiens ENSG00000135316 I 0.960
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.820
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.901
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.910
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.965
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.960
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.851
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.851
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.960