YTHDC1 (Loxodonta africana)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 ENSLAFG00000021592 T62047_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YTHDC1
M354_0.6 		Homo sapiens KVVURC SELEX
Cook et al.(2011)
969_20167602 		0.990
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000017915 YTH 394 490
ENSLAFP00000025426 YTH 329 425

Links

Other YTH family RBPs
Other Loxodonta africana RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000627m Prunus persica ppa000627m N 0.000
mgf015234m Mimulus guttatus mgf015234m N 0.000
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.000
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.000
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.000
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.000
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.000
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.000
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.000
mgf015734m Mimulus guttatus mgf015734m N 0.000
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.000
ppa000626m Prunus persica ppa000626m N 0.000
MDP0000776183 Malus x domestica MDP0000776183 N 0.000
MDP0000319167 Malus x domestica MDP0000319167 N 0.000
MDP0000314338 Malus x domestica MDP0000314338 N 0.000
MDP0000191652 Malus x domestica MDP0000191652 N 0.000
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.000
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.000
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.000
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.000
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.000
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.000
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.000
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.000
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.000
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.000
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.000
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.000
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.000
PK21390.1 Cannabis sativa PK21390.1 N 0.000
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.000
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.000
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.000
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.000
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.000
30143.m001164 Ricinus communis 30143.m001164 N 0.000
SB09G001090 Sorghum bicolor Sb09g001090 N 0.000
SB03G039600 Sorghum bicolor Sb03g039600 N 0.000
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.000
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.000
PK00601.1 Cannabis sativa PK00601.1 N 0.000