fgeneshTA2_pg.C_scaffold_15000146 (Trichoplax adhaerens)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgeneshTA2_pg.C_scaffold_15000146 T05380_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgeneshTA2_pg.C_scaffold_15000146 CCCH ZF 97 122

Links

Other CCCH ZF family RBPs
Other Trichoplax adhaerens RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
72073 Helobdella robusta 72073 N 0.769
AAH77826 Xenopus laevis AAH77826 N 0.769
ACLA_016930 Aspergillus clavatus CADACLAG00000891 N 0.731
AFUA_5G13930 Aspergillus fumigatus CADAFUAG00006431 N 0.769
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.769
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.769
An14g05330 Aspergillus niger CADANGAG00011470 N 0.769
ANIA_06922 Aspergillus nidulans CADANIAG00007728 N 0.731
Aqu1.222312 Amphimedon queenslandica Aqu1.222312 N 0.808
ATEG_06133 Aspergillus terreus CADATEAG00002525 N 0.731
BAD89267 Xenopus laevis BAD89267 N 0.769
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.731
Bm1_13920 Brugia malayi Bm1_13920 N 0.731
cassava28857.valid.m1 Manihot esculenta cassava28857.valid.m1 N 0.731
cassava28858.valid.m1 Manihot esculenta cassava28858.valid.m1 N 0.731
cassava3130.m1 Manihot esculenta cassava3130.m1 N 0.731
CBG00292 Caenorhabditis briggsae CBG00292 N 0.769
CBN03898 Caenorhabditis brenneri CBN03898 N 0.769
CBN11546 Caenorhabditis brenneri CBN11546 N 0.769
CJA17052 Caenorhabditis japonica CJA17052 N 0.769
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.731
CRE20408 Caenorhabditis remanei CRE20408 N 0.769
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.769
ENSCING00000006888 Ciona intestinalis ENSCING00000006888 N 0.769
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.769
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.808
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.769
ENSOCUG00000011909 Oryctolagus cuniculus ENSOCUG00000011909 N 0.731
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.769
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.769
estExt_Genewise1Plus.C_sca_2280007 Lottia gigantea estExt_Genewise1Plus.C_sca_2280007 N 0.731
estExt_gwp.C_6160004 Branchiostoma floridae estExt_gwp.C_6160004 N 0.769
e_gw.53.202.1 Nematostella vectensis e_gw.53.202.1 N 0.769
F27D4.4 Caenorhabditis elegans F27D4.4 N 0.769
fgenesh1_pg.00710_#_148 Aspergillus carbonarius fgenesh1_pg.00710_#_148 N 0.769
GD10149 Drosophila simulans FBgn0181924 N 0.769
GK21573 Drosophila willistoni FBgn0223565 N 0.769
Glyma13g19900.1 Glycine max Glyma13g19900.1 N 0.731
GSVIVG00016357001 Vitis vinifera GSVIVG00016357001 N 0.731
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.769
LOAG_00784 Loa loa LOAG_00784 N 0.731
LOC100068634 Equus caballus ENSECAG00000017149 N 0.769
Minc08580 Meloidogyne incognita Minc08580 N 0.731
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.769
NFIA_073040 Neosartorya fischeri CADNFIAG00007899 N 0.769
PASA_GEN_1200032 Daphnia pulex PASA_GEN_1200032 N 0.769
PHUM521160 Pediculus humanus PHUM521160 N 0.885
ppa007903m Prunus persica ppa007903m N 0.731
Q6DD06 Xenopus laevis Q6DD06 N 0.769
RGD1564243 Rattus norvegicus ENSRNOG00000015276 N 0.731
s_451242 Phytophthora sojae s_451242 N 0.731
WUBG_13399 Wuchereria bancrofti WUBG_13399 N 0.731
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.769
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.769
ZC3H15 Dasypus novemcinctus ENSDNOG00000018840 N 0.731
zc3h15 Danio rerio ENSDARG00000015889 N 0.808
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.769
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.769
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.769
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.769
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.769
ZC3H15 Anolis carolinensis ENSACAG00000001916 N 0.808
ZC3H15 Felis catus ENSFCAG00000008213 N 0.769
zc3h15 Xenopus tropicalis ENSXETG00000013336 N 0.808
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.769
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.769
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.808
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.808
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.769
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.769
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.769
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.769
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.769
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.769
ZC3H15 Homo sapiens ENSG00000065548 N 0.769
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.769
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.769
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.769
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.769
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.808
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.846
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.769
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.769
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.769
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.769
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.769
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.769
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.769