gw1.3.668.1 (Ostreococcus RCC809)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 gw1.3.668.1 T05540_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.741
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.741
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.741
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.741
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.741
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.741
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.741
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.3.668.1 CCCH ZF 9 34
gw1.3.668.1 CCCH ZF 47 71

Links

Other CCCH ZF family RBPs
Other Ostreococcus RCC809 RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
0300010273 Ostreococcus tauri 0300010273 I 0.923
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.722
AAD24208 Xenopus laevis AAD24208 I 0.704
AAD24209 Xenopus laevis AAD24209 I 0.722
AAH44086 Xenopus laevis AAH44086 I 0.741
AAH84197 Xenopus laevis AAH84197 I 0.704
AAH84221 Xenopus laevis AAH84221 I 0.722
AAI00163 Xenopus laevis AAI00163 I 0.704
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.759
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.759
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.722
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.722
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.722
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.741
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.704
au.g10607_t1 Chlamydomonas reinhardtii au.g10607_t1 N 0.774
BAC54909 Xenopus laevis BAC54909 I 0.722
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.741
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.759
CMA121C Cyanidioschyzon merolae CMA121C N 0.778
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.741
EDI_287240 Entamoeba dispar EDI_287240 N 0.722
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.741
EHI_008770 Entamoeba histolytica EHI_008770 N 0.722
EIN_295900 Entamoeba invadens EIN_295900 N 0.741
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.722
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.704
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.741
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.741
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.722
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.741
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.722
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.722
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.722
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.704
estExt_fgenesh1_pg.C_3580026 Physcomitrella patens estExt_fgenesh1_pg.C_3580026 N 0.736
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.778
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.759
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.778
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.704
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.778
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.722
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.759
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.722
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.759
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.704
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.815
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.778
fgenesh1_pg.C_scaffold_4000193 Sporobolomyces roseus fgenesh1_pg.C_scaffold_4000193 N 0.755
fgenesh1_pg.scaffold_257000036 Physcomitrella patens fgenesh1_pg.scaffold_257000036 N 0.717
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.815
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.722
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.796
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.865
gw1.14.301.1 Coccomyxa C 169 gw1.14.301.1 N 0.788
gw1.4.464.1 Volvox carteri gw1.4.464.1 N 0.709
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.704
gw1.57.55.1 Melampsora laricis populina gw1.57.55.1 N 0.731
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.811
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.942
LOC100063597 Equus caballus ENSECAG00000018860 I 0.722
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.722
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.741
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.722
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.704
PTTG_07763 Puccinia triticina PTTG_07763 N 0.741
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.722
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.741
Q805B4 Xenopus laevis Q805B4 I 0.722
RO3G_05094 Rhizopus oryzae RO3G_05094 N 0.712
RO3G_10992 Rhizopus oryzae RO3G_10992 N 0.712
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.722
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.722
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.704
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.704
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.704
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.704
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.722
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.741
Zfp36 Mus musculus ENSMUSG00000044786 I 0.741
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.717
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.717
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.741
ZFP36 Danio rerio ENSDARG00000044395 I 0.722
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.741
ZFP36 Homo sapiens ENSG00000128016 D 0.741
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.741
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.704
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.722
ZFP36 Canis familiaris ENSCAFG00000005530 I 0.750
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.741
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.741
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.741
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.741
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.741
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.741
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.741
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.704
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.722
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.722
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.704
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.722
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.704
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.722
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.722
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.722
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.704
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.722
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.722
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.722
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.704
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.704
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.722
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.722
ZFP36L1 Homo sapiens ENSG00000185650 I 0.722
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.722
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.722
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.722
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.722
zfp36l1a Danio rerio ENSDARG00000016154 I 0.722
zfp36l1b Danio rerio ENSDARG00000021443 I 0.704
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.704
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.722
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.704
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.741
zfp36l2 Danio rerio ENSDARG00000021806 I 0.704
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.722
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.722
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.722
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.704
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.741
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.722
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.722
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.741
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.722
ZFP36L2 Homo sapiens ENSG00000152518 I 0.722
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.722
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.722
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.722
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.722
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.722
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.722
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.722
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.741
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.722