fgenesh1_pg.C_scaffold_107000027 (Daphnia pulex)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 fgenesh1_pg.C_scaffold_107000027 T21041_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_107000027 KH 130 179

Links

Other KH family RBPs
Other Daphnia pulex RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
194870 Helobdella robusta 194870 N 0.700
28525.m000262 Ricinus communis 28525.m000262 N 0.720
AAEL011832 Aedes aegypti AAEL011832 N 0.800
AAH42279 Xenopus laevis AAH42279 N 0.800
AAQ24169 Xenopus laevis AAQ24169 N 0.800
AGAP004145 Anopheles gambiae AGAP004145 N 0.760
AMAG_12889 Allomyces macrogynus AMAG_12889 N 0.720
AMAG_14219 Allomyces macrogynus AMAG_14219 N 0.720
amel4_ncbi_hmm14037 Apis mellifera amel4_ncbi_hmm14037 N 0.880
Ame_R013855 Ailuropoda melanoleuca Ame_R013855 N 0.780
B9GHH7_POPTR Populus trichocarpa POPTR_0001s47320 N 0.720
B9N5M8_POPTR Populus trichocarpa POPTR_0011s16880 N 0.720
BGIBMGA014064 Bombyx mori BGIBMGA014064 N 0.880
Bm1_42995 Brugia malayi Bm1_42995 N 0.780
cassava30594.valid.m1 Manihot esculenta cassava30594.valid.m1 N 0.740
cassava7030.valid.m1 Manihot esculenta cassava7030.valid.m1 N 0.720
Chlre2_kg.scaffold_20000177 Chlamydomonas reinhardtii Chlre2_kg.scaffold_20000177 N 0.720
CPIJ015853 Culex quinquefasciatus CPIJ015853 N 0.840
CPIJ019677 Culex quinquefasciatus CPIJ019677 N 0.840
CpipJ_CPIJ015853 Culex pipiens CpipJ_CPIJ015853 N 0.840
CpipJ_CPIJ019677 Culex pipiens CpipJ_CPIJ019677 N 0.840
Cucsa.041830 Cucumis sativus Cucsa.041830 N 0.700
Cucsa.201760 Cucumis sativus Cucsa.201760 N 0.700
DGIL_AUG5s4501g8t1 Acyrtosiphon pisum DGIL_AUG5s4501g8t1 N 0.900
EDI_198550 Entamoeba dispar EDI_198550 N 0.700
EDP42908.1 Malassezia globosa EDP42908.1 N 0.720
EFA79428.1 Polysphondylium pallidum EFA79428.1 N 0.760
EHI_065870 Entamoeba histolytica EHI_065870 N 0.700
ENSCING00000009577 Ciona intestinalis ENSCING00000009577 N 0.820
ENSCJAG00000022611 Callithrix jacchus ENSCJAG00000022611 N 0.780
ENSCSAVG00000001303 Ciona savignyi ENSCSAVG00000001303 N 0.820
ENSOCUG00000006100 Oryctolagus cuniculus ENSOCUG00000006100 N 0.780
ENSOCUG00000022236 Oryctolagus cuniculus ENSOCUG00000022236 N 0.780
ENSPPYG00000012353 Pongo pygmaeus ENSPPYG00000012353 N 0.780
estExt_fgenesh1_kg.C_140013 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_140013 N 0.700
estExt_fgenesh1_pg.C_110137 Monosiga brevicollis estExt_fgenesh1_pg.C_110137 N 0.760
estExt_fgenesh2_kg.C_20130 Agaricus bisporus estExt_fgenesh2_kg.C_20130 N 0.700
estExt_fgenesh2_pm.C_sca_70005 Lottia gigantea estExt_fgenesh2_pm.C_sca_70005 N 0.700
estExt_Genewise1.C_260084 Melampsora laricis populina estExt_Genewise1.C_260084 N 0.720
estExt_Genewise1.C_5820041 Capitella teleta estExt_Genewise1.C_5820041 N 0.780
estExt_Genewise1Plus.C_10658 Mucor circinelloides estExt_Genewise1Plus.C_10658 N 0.740
estExt_Genewise1Plus.C_250095 Phycomyces blakesleeanus estExt_Genewise1Plus.C_250095 N 0.720
estExt_Genewise1Plus.C_600117 Volvox carteri estExt_Genewise1Plus.C_600117 N 0.720
e_gw1.12.287.1 Serpula lacrymans e_gw1.12.287.1 N 0.720
e_gw1.15.315.1 Tremella mesenterica e_gw1.15.315.1 N 0.700
e_gw1.2.2126.1 Schizophyllum commune e_gw1.2.2126.1 N 0.720
e_gw1.2.756.1 Heterobasidion annosum e_gw1.2.756.1 N 0.720
e_gw1.4.614.1 Micromonas pusilla e_gw1.4.614.1 N 0.700
e_gw1.7.528.1 Ostreococcus RCC809 e_gw1.7.528.1 N 0.700
e_gwEuk.7.409.1 Ostreococcus lucimarinus e_gwEuk.7.409.1 N 0.700
e_gwh1.2.512.1 Laccaria bicolor e_gwh1.2.512.1 N 0.700
e_gww2.1.865.1 Phanerochaete chrysosporium e_gww2.1.865.1 N 0.740
fgenesh1_pg.scaffold_18000119 Nematostella vectensis fgenesh1_pg.scaffold_18000119 N 0.820
fgenesh2_pg.scaffold_196000015 Branchiostoma floridae fgenesh2_pg.scaffold_196000015 N 0.800
fgenesh2_pm.scaffold_78000001 Branchiostoma floridae fgenesh2_pm.scaffold_78000001 N 0.800
fgenesh3_pm.54__15 Postia placenta fgenesh3_pm.54__15 N 0.740
fgeneshCV_pg.C_scaffold_11000142 Chlorella vulgaris fgeneshCV_pg.C_scaffold_11000142 N 0.780
fgeneshTA2_pg.C_scaffold_14000176 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_14000176 N 0.820
GA11169-RA Drosophila pseudoobscura FBgn0071224 N 0.882
GD17488 Drosophila simulans FBgn0189040 N 0.863
GE17874 Drosophila yakuba FBgn0068478 N 0.863
Genemark1.5719_g Coccomyxa C 169 Genemark1.5719_g N 0.780
GF20246 Drosophila ananassae FBgn0097253 N 0.863
GG19285 Drosophila erecta FBgn0111489 N 0.863
GH12628 Drosophila grimshawi FBgn0120107 N 0.882
GI11042 Drosophila mojavensis FBgn0133805 N 0.863
GID1.0042265 Dictyostelium purpureum GID1.0042265 N 0.780
GJ15820 Drosophila virilis FBgn0203007 N 0.882
GK20148 Drosophila willistoni FBgn0222145 N 0.882
Glyma08g44800.1 Glycine max Glyma08g44800.1 N 0.700
Glyma18g08080.1 Glycine max Glyma18g08080.1 N 0.700
Glyma18g08100.1 Glycine max Glyma18g08100.1 N 0.700
GM23025 Drosophila sechellia FBgn0177893 N 0.863
GP3.070330 Batrachochytrium dendrobatidis GP3.070330 N 0.700
GSTUMT00003923001 Tuber melanosporum GSTUMT00003923001 N 0.700
gw1.1.2472.1 Pleurotus ostreatus gw1.1.2472.1 N 0.720
l(1)G0004 Drosophila melanogaster FBgn0027334 N 0.863
LjSGA_017760.2 Lotus japonicus LjSGA_017760.2 N 0.700
LOAG_05624 Loa loa LOAG_05624 N 0.780
LOC100061904 Equus caballus ENSECAG00000011263 N 0.780
LOC100389955 Callithrix jacchus ENSCJAG00000006564 N 0.780
MDP0000120063 Malus x domestica MDP0000120063 N 0.700
MDP0000136407 Malus x domestica MDP0000136407 N 0.700
MDP0000265633 Malus x domestica MDP0000265633 N 0.700
MDP0000754021 Malus x domestica MDP0000754021 N 0.700
Medtr3g080390 Medicago truncatula Medtr3g080390 N 0.720
mgf006621m Mimulus guttatus mgf006621m N 0.700
nasonia_NCBI_hmm120183 Nasonia vitripennis nasonia_NCBI_hmm120183 N 0.880
PHUM356890 Pediculus humanus PHUM356890 N 0.820
PK08146.1 Cannabis sativa PK08146.1 N 0.700
Pno1 Dipodomys ordii ENSDORG00000006867 N 0.780
pno1 Danio rerio ENSDARG00000008502 N 0.820
PNO1 Erinaceus europaeus ENSEEUG00000009611 N 0.780
PNO1 Cavia porcellus ENSCPOG00000010130 N 0.780
PNO1 Canis familiaris ENSCAFG00000003256 N 0.780
PNO1 Anolis carolinensis ENSACAG00000001218 N 0.780
PNO1 Pan troglodytes ENSPTRG00000011999 N 0.780
pno1 Dictyostelium discoideum DDB_G0287557 N 0.780
PNO1 Homo sapiens ENSG00000115946 N 0.780
PNO1 Gasterosteus aculeatus ENSGACG00000012047 N 0.780
PNO1 Microcebus murinus ENSMICG00000010897 N 0.780
Pno1 Mus musculus ENSMUSG00000020116 N 0.760
PNO1 Ornithorhynchus anatinus ENSOANG00000008388 N 0.780
PNO1 Tursiops truncatus ENSTTRG00000014002 N 0.780
PNO1 Vicugna pacos ENSVPAG00000012083 N 0.780
PNO1 Ochotona princeps ENSOPRG00000009643 N 0.780
Pno1 Rattus norvegicus ENSRNOG00000005524 N 0.780
pno1 Xenopus tropicalis ENSXETG00000017349 N 0.800
PNO1 Sus scrofa ENSSSCG00000008352 N 0.780
PNO1 Procavia capensis ENSPCAG00000016146 N 0.780
PNO1 Monodelphis domestica ENSMODG00000003567 N 0.780
PNO1 Takifugu rubripes ENSTRUG00000012470 N 0.800
PNO1 Gorilla gorilla ENSGGOG00000009158 N 0.780
PNO1 Loxodonta africana ENSLAFG00000000046 N 0.780
PNO1 Macropus eugenii ENSMEUG00000004504 N 0.780
PNO1 Meleagris gallopavo ENSMGAG00000004514 N 0.800
PNO1 Pteropus vampyrus ENSPVAG00000012695 N 0.780
PNO1 Myotis lucifugus ENSMLUG00000010850 N 0.780
PNO1 Taeniopygia guttata ENSTGUG00000002369 N 0.800
PNO1 Tetraodon nigroviridis ENSTNIG00000009825 N 0.800
PNO1_BOVIN Bos taurus ENSBTAG00000010604 N 0.780
PNO1_CHICK Gallus gallus ENSGALG00000009093 N 0.800
PNO1_IXOSC Ixodes scapularis ISCW023560 N 0.800
ppa009897m Prunus persica ppa009897m N 0.700
ppa011086m Prunus persica ppa011086m N 0.700
PPA25260 Pristionchus pacificus PPA25260 N 0.720
PTTG_01898 Puccinia triticina PTTG_01898 N 0.700
Q6VBQ6_ORYLA Oryzias latipes ENSORLG00000002371 N 0.820
Q7YRC8_MACMU Macaca mulatta ENSMMUG00000017461 N 0.780
Q8AVH4 Xenopus laevis Q8AVH4 N 0.800
rbp28 Schizosaccharomyces pombe SPAC2C4.11c N 0.700
RO3G_00885 Rhizopus oryzae RO3G_00885 N 0.740
RO3G_05288 Rhizopus oryzae RO3G_05288 N 0.740
SJAG_03872 Schizosaccharomyces japonicus SJAG_03872 N 0.700
SNAPOd2T00014997001 Oikopleura dioica SNAPOd2T00014997001 N 0.740
SNAPOd2T00029081001 Oikopleura dioica SNAPOd2T00029081001 N 0.740
SPRG_02415 Saprolegnia parasitica SPRG_02415 N 0.700
WUBG_12774 Wuchereria bancrofti WUBG_12774 N 0.780
XM_001095777.1 Macaca mulatta ENSMMUG00000030357 N 0.780
XM_001110046.1 Macaca mulatta ENSMMUG00000003556 N 0.740
XP_001202155.1 Strongylocentrotus purpuratus XP_001202155.1 N 0.840
XP_001202160.1 Strongylocentrotus purpuratus XP_001202160.1 N 0.840
XP_002162789.1 Hydra magnipapillata XP_002162789.1 N 0.840
XP_791733.2 Strongylocentrotus purpuratus XP_791733.2 N 0.840
XP_798188.2 Strongylocentrotus purpuratus XP_798188.2 N 0.840