CBN04295 (Caenorhabditis brenneri)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBN04295 T33985_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBN04295 RRM 34 104
CBN04295 RRM 122 191
CBN04295 RRM 215 283
CBN04295 RRM 319 388

Links

Other RRM family RBPs
Other Caenorhabditis brenneri RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL010318 Aedes aegypti AAEL010318 I 0.720
Bm1_06880 Brugia malayi Bm1_06880 I 0.747
Bm1_16080 Brugia malayi Bm1_16080 I 0.747
CBG02207 Caenorhabditis briggsae CBG02207 N 0.982
CBG07431 Caenorhabditis briggsae CBG07431 N 0.779
CBN18184 Caenorhabditis brenneri CBN18184 N 0.751
CJA16600 Caenorhabditis japonica CJA16600 N 0.733
CJA17800 Caenorhabditis japonica CJA17800 N 0.900
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.709
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.709
CRE22405 Caenorhabditis remanei CRE22405 N 0.758
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.706
GD11341 Drosophila simulans FBgn0183090 I 0.709
GE11925 Drosophila yakuba FBgn0229707 I 0.713
GF12652 Drosophila ananassae FBgn0089688 I 0.713
GG21846 Drosophila erecta FBgn0114024 I 0.713
GH21052 Drosophila grimshawi FBgn0128514 I 0.720
GI18654 Drosophila mojavensis FBgn0141393 I 0.716
GJ21671 Drosophila virilis FBgn0208790 I 0.713
GK19652 Drosophila willistoni FBgn0221650 I 0.716
GL11548 Drosophila persimilis FBgn0149157 I 0.706
GM21847 Drosophila sechellia FBgn0176724 I 0.706
ISCW014211 Ixodes scapularis ISCW014211 I 0.719
LOAG_01058 Loa loa LOAG_01058 I 0.747
pab-1 Caenorhabditis elegans Y106G6H.2 I 0.932
pab-2 Caenorhabditis elegans F18H3.3 N 0.747
pAbp Drosophila melanogaster FBgn0261619 D 0.706
PHUM617090 Pediculus humanus PHUM617090 I 0.706