GJ21671 (Drosophila virilis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0208790 T44101_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.904
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.719
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.705
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.705
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0236088 RRM 4 74
FBpp0236088 RRM 92 161
FBpp0236088 RRM 185 253
FBpp0236088 RRM 289 358

Links

Other RRM family RBPs
Other Drosophila virilis RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GK19652 Drosophila willistoni FBgn0221650 I 0.971
GI18654 Drosophila mojavensis FBgn0141393 I 0.965
GH21052 Drosophila grimshawi FBgn0128514 I 0.965
GL11548 Drosophila persimilis FBgn0149157 I 0.961
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.957
GF12652 Drosophila ananassae FBgn0089688 I 0.946
GG21846 Drosophila erecta FBgn0114024 I 0.925
GE11925 Drosophila yakuba FBgn0229707 I 0.925
GD11341 Drosophila simulans FBgn0183090 I 0.922
pAbp Drosophila melanogaster FBgn0261619 D 0.918
GM21847 Drosophila sechellia FBgn0176724 I 0.918
AAEL010318 Aedes aegypti AAEL010318 I 0.826
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.809
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.809
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.794
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.794
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.794
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.791
AGAP011092 Anopheles gambiae AGAP011092 I 0.791
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.791
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.791
PHUM617090 Pediculus humanus PHUM617090 I 0.787
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.787
ISCW014211 Ixodes scapularis ISCW014211 I 0.777
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.755
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.738
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.737
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.729
AAH73435 Xenopus laevis AAH73435 I 0.728
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.727
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.727
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.725
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.725
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.725
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.725
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.725
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.725
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.725
LOC100054235 Equus caballus ENSECAG00000009396 I 0.725
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.725
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.725
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.725
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.725
PABPC4 Homo sapiens ENSG00000090621 D 0.725
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.725
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.724
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.723
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.722
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.722
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.722
PABPC4 Gallus gallus ENSGALG00000003800 I 0.721
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.720
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.720
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.720
AAH52100 Xenopus laevis AAH52100 I 0.718
P20965 Xenopus laevis P20965 I 0.718
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.718
Gm10110 Mus musculus ENSMUSG00000062093 I 0.718
CAA40721 Xenopus laevis CAA40721 I 0.718
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.715
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.715
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.715
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.715
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.715
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.715
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.715
AAA60936 Xenopus laevis AAA60936 I 0.715
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.715
CBN04295 Caenorhabditis brenneri CBN04295 I 0.713
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.713
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.712
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.711
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.711
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.711
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.711
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.711
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.711
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.711
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.711
pabpc4 Danio rerio ENSDARG00000059259 I 0.711
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.711
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.711
Q6IP09 Xenopus laevis Q6IP09 I 0.711
AAI08463 Xenopus laevis AAI08463 I 0.711
AAH72110 Xenopus laevis AAH72110 I 0.711
PABPC1 Homo sapiens ENSG00000070756 D 0.711
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.711
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.711
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.711
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.711
185682 Helobdella robusta 185682 I 0.709
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.708
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.708
pabpc1a Danio rerio ENSDARG00000017219 I 0.708
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.708
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.708
Bm1_06880 Brugia malayi Bm1_06880 I 0.706
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.706
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.706
Bm1_16080 Brugia malayi Bm1_16080 I 0.706
CJA17800 Caenorhabditis japonica CJA17800 N 0.706
LOAG_01058 Loa loa LOAG_01058 I 0.706
CBG02207 Caenorhabditis briggsae CBG02207 N 0.706
pabpc1b Danio rerio ENSDARG00000021140 I 0.705
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.704
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.704
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.704
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.704
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.701