GA18673-RA (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0078673 T43162_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.900
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.709
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0277751 RRM 4 74
FBpp0277751 RRM 92 161
FBpp0277751 RRM 185 253
FBpp0277751 RRM 289 358

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

93 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GL11548 Drosophila persimilis FBgn0149157 I 0.996
GJ21671 Drosophila virilis FBgn0208790 I 0.957
GI18654 Drosophila mojavensis FBgn0141393 I 0.943
GK19652 Drosophila willistoni FBgn0221650 I 0.943
GH21052 Drosophila grimshawi FBgn0128514 I 0.929
GF12652 Drosophila ananassae FBgn0089688 I 0.929
GE11925 Drosophila yakuba FBgn0229707 I 0.918
GG21846 Drosophila erecta FBgn0114024 I 0.918
GD11341 Drosophila simulans FBgn0183090 I 0.915
pAbp Drosophila melanogaster FBgn0261619 D 0.911
GM21847 Drosophila sechellia FBgn0176724 I 0.911
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.798
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.798
AAEL010318 Aedes aegypti AAEL010318 I 0.798
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.798
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.787
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.787
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.787
AGAP011092 Anopheles gambiae AGAP011092 I 0.784
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.784
PHUM617090 Pediculus humanus PHUM617090 I 0.780
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.780
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.780
ISCW014211 Ixodes scapularis ISCW014211 I 0.759
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.748
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.730
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.727
AAH73435 Xenopus laevis AAH73435 I 0.724
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.722
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.721
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.718
PABPC4 Gallus gallus ENSGALG00000003800 I 0.717
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.716
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.716
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.716
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.715
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.715
LOC100054235 Equus caballus ENSECAG00000009396 I 0.715
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.715
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.715
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.715
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.715
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.715
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.715
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.715
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.715
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.715
PABPC4 Homo sapiens ENSG00000090621 D 0.715
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.715
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.713
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.711
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.711
P20965 Xenopus laevis P20965 I 0.711
CAA40721 Xenopus laevis CAA40721 I 0.711
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.711
AAH52100 Xenopus laevis AAH52100 I 0.711
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.708
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.708
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.708
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.708
Gm10110 Mus musculus ENSMUSG00000062093 I 0.708
AAA60936 Xenopus laevis AAA60936 I 0.708
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.708
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.708
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.708
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.708
pabpc4 Danio rerio ENSDARG00000059259 I 0.708
CBN04295 Caenorhabditis brenneri CBN04295 I 0.706
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.706
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.706
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.706
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.705
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.704
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.704
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.704
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.704
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.704
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.704
PABPC1 Homo sapiens ENSG00000070756 D 0.704
Q6IP09 Xenopus laevis Q6IP09 I 0.704
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.704
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.704
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.704
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.704
AAI08463 Xenopus laevis AAI08463 I 0.704
AAH72110 Xenopus laevis AAH72110 I 0.704
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.704
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.704
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.704
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.704
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.704
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.701
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.701