CPIJ007980 (Culex quinquefasciatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CPIJ007980 T34260_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.777
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.754
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.746
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.746
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CPIJ007980-PA RRM 4 74
CPIJ007980-PA RRM 92 161
CPIJ007980-PA RRM 185 253
CPIJ007980-PA RRM 288 356

Links

Other RRM family RBPs
Other Culex quinquefasciatus RBPs

140 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 1.000
AAEL010318 Aedes aegypti AAEL010318 I 0.964
AGAP011092 Anopheles gambiae AGAP011092 I 0.889
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.868
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.868
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.868
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.857
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.857
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.857
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.836
PHUM617090 Pediculus humanus PHUM617090 I 0.829
GK19652 Drosophila willistoni FBgn0221650 I 0.812
GJ21671 Drosophila virilis FBgn0208790 I 0.809
GI18654 Drosophila mojavensis FBgn0141393 I 0.809
GH21052 Drosophila grimshawi FBgn0128514 I 0.805
GF12652 Drosophila ananassae FBgn0089688 I 0.794
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.789
ISCW014211 Ixodes scapularis ISCW014211 I 0.787
GG21846 Drosophila erecta FBgn0114024 I 0.786
GE11925 Drosophila yakuba FBgn0229707 I 0.786
pAbp Drosophila melanogaster FBgn0261619 D 0.786
GM21847 Drosophila sechellia FBgn0176724 I 0.786
GD11341 Drosophila simulans FBgn0183090 I 0.784
GL11548 Drosophila persimilis FBgn0149157 I 0.784
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.780
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.774
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.767
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.767
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.767
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.767
LOC100054235 Equus caballus ENSECAG00000009396 I 0.767
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.765
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.764
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.764
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.763
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.763
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.763
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.763
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.763
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.763
pabpc1a Danio rerio ENSDARG00000017219 I 0.763
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.763
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.763
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.763
pabpc4 Danio rerio ENSDARG00000059259 I 0.763
PABPC4 Homo sapiens ENSG00000090621 D 0.763
PABPC4 Gallus gallus ENSGALG00000003800 I 0.763
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.763
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.763
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.763
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.762
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.760
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.760
AAH52100 Xenopus laevis AAH52100 I 0.760
AAH73435 Xenopus laevis AAH73435 I 0.760
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.760
P20965 Xenopus laevis P20965 I 0.760
CAA40721 Xenopus laevis CAA40721 I 0.760
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.760
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.756
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.756
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.756
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.756
AAA60936 Xenopus laevis AAA60936 I 0.756
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.756
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.756
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.756
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.756
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.756
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.756
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.754
pabpc1b Danio rerio ENSDARG00000021140 I 0.754
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.753
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.753
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.753
PABPC1 Homo sapiens ENSG00000070756 D 0.753
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.753
Gm10110 Mus musculus ENSMUSG00000062093 I 0.753
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.753
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.753
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.753
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.753
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.753
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.753
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.753
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.753
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.753
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.753
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.749
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.749
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.747
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.747
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.746
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.744
AAI08463 Xenopus laevis AAI08463 I 0.742
Q6IP09 Xenopus laevis Q6IP09 I 0.742
AAH72110 Xenopus laevis AAH72110 I 0.742
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.742
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.741
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.739
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.739
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.735
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.735
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.734
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.734
185682 Helobdella robusta 185682 I 0.733
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.731
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.731
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.727
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.726
Bm1_06880 Brugia malayi Bm1_06880 I 0.723
LOAG_01058 Loa loa LOAG_01058 I 0.723
Bm1_16080 Brugia malayi Bm1_16080 I 0.723
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.721
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.721
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.721
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.721
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.718
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.717
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.717
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.715
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.715
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.714
PABPC1L Gallus gallus ENSGALG00000004123 I 0.714
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.712
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.711
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.710
AAH71118 Xenopus laevis AAH71118 I 0.710
Q6GR16 Xenopus laevis Q6GR16 I 0.710
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.710
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.710
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.709
CBN04295 Caenorhabditis brenneri CBN04295 I 0.709
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.707
AAK29408 Xenopus laevis AAK29408 I 0.707
pabpc1l Danio rerio ENSDARG00000002597 I 0.707
AAH80020 Xenopus laevis AAH80020 I 0.707
Q98SP8 Xenopus laevis Q98SP8 I 0.707
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.703
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.703