Q5ZKT4_CHICK (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000009484 T37682_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.752
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000015427 RRM 6 67
ENSGALP00000015427 RRM 107 172
ENSGALP00000037225 RRM 6 68
ENSGALP00000037225 RRM 106 154

Links

Other RRM family RBPs
Other Gallus gallus RBPs

114 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.744
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.744
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.744
AAH44085 Xenopus laevis AAH44085 I 0.845
AAH71160 Xenopus laevis AAH71160 I 0.860
AGAP004592 Anopheles gambiae AGAP004592 I 0.721
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.705
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.744
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.744
B52 Drosophila melanogaster FBgn0004587 D 0.752
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.752
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.736
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.736
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.713
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.868
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.822
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 1.000
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.744
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.744
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.713
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.705
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.752
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.736
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.744
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.744
GF17608 Drosophila ananassae FBgn0094626 I 0.752
GH18528 Drosophila grimshawi FBgn0125995 I 0.744
GI22065 Drosophila mojavensis FBgn0144794 I 0.744
GJ24113 Drosophila virilis FBgn0211197 I 0.744
GK13948 Drosophila willistoni FBgn0215954 I 0.752
GL23543 Drosophila persimilis FBgn0161133 I 0.744
ISCW010321 Ixodes scapularis ISCW010321 I 0.721
ISCW010322 Ixodes scapularis ISCW010322 I 0.729
ISCW014220 Ixodes scapularis ISCW014220 I 0.744
LOC100053264 Equus caballus ENSECAG00000026873 I 0.744
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.744
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.736
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.736
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.845
Ppa-rsp-1 Pristionchus pacificus PPA18140 N 0.713
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.729
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.744
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.752
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.744
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.705
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.713
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.721
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.744
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.736
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.744
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.713
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.744
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.744
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.729
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.729
SRSF4 Homo sapiens ENSG00000116350 I 0.744
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.736
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.744
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.744
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.744
Srsf4 Mus musculus ENSMUSG00000028911 I 0.744
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.744
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.744
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.744
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.736
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.744
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.744
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.744
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.736
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.744
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.744
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.744
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.752
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.744
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.744
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.744
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.744
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.744
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.744
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.744
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.752
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.744
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.744
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.814
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.744
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.729
SRSF5 Homo sapiens ENSG00000100650 D 0.744
SRSF5 Felis catus ENSFCAG00000008848 I 0.744
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.736
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.744
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.736
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.744
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.713
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.744
Srsf5 Mus musculus ENSMUSG00000021134 I 0.744
srsf5a Danio rerio ENSDARG00000029818 I 0.822
srsf5b Danio rerio ENSDARG00000027734 I 0.736
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.705
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.713
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.713
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.705
SRSF6 Homo sapiens ENSG00000124193 I 0.713
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.705
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.713
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.705
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.713
Srsf6 Mus musculus ENSMUSG00000016921 I 0.713
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.713
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.845
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.775
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.984
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.775