ELAVL1 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000019823 T42185_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.873
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.873
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.873
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.873
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.873
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.873
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.770
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.770
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.770
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.761
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.761
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000023090 RRM 21 92
ENSTNIP00000023090 RRM 108 174
ENSTNIP00000023090 RRM 246 316

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

161 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006434 Ricinus communis 30169.m006434 I 0.000
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.000
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.000
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.000
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.000
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.000
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.000
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.000
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.000
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.000
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.000
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.000
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.000
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.000
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.000
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.000
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.000
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.000
MDP0000123012 Malus x domestica MDP0000123012 N 0.000
MDP0000123414 Malus x domestica MDP0000123414 N 0.000
MDP0000276227 Malus x domestica MDP0000276227 I 0.000
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.000
mgf023806m Mimulus guttatus mgf023806m I 0.000
ppa005940m Prunus persica ppa005940m I 0.000
SB01G045570 Sorghum bicolor Sb01g045570 I 0.000
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.000