ELAVL4 (Vicugna pacos)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSVPAG00000011606 T42805_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		1.000
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		1.000
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		1.000
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.957
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.957
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.957
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.774
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.774
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.774
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.774
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.774
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.774
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000010801 RRM 53 123
ENSVPAP00000010801 RRM 139 207
ENSVPAP00000010801 RRM 304 374

Links

Other RRM family RBPs
Other Vicugna pacos RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185541 Helobdella robusta 185541 I 0.000
187316 Helobdella robusta 187316 N 0.000
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 1.000
AAA96943 Xenopus laevis AAA96943 I 0.958
AAA96944 Xenopus laevis AAA96944 I 0.915
AAA96945 Xenopus laevis AAA96945 I 0.995
AAH94189 Xenopus laevis AAH94189 I 0.962
AAH99348 Xenopus laevis AAH99348 I 0.995
AAI69769 Xenopus laevis AAI69769 I 0.915
AAI70539 Xenopus laevis AAI70539 I 0.962
AGAP000965 Anopheles gambiae AGAP000965 I 0.750
AGAP001883 Anopheles gambiae AGAP001883 N 0.000
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.778
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.957
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.906
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 1.000
CAA59430 Xenopus laevis CAA59430 I 0.953
CBF67567 Xenopus laevis CBF67567 I 0.995
CBU92440 Xenopus laevis CBU92440 I 0.995
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.728
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.746
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.728
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.746
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.957
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.957
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.929
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.957
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.957
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.938
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.957
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.957
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.938
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.957
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.957
Elavl2 Mus musculus ENSMUSG00000008489 I 0.957
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.953
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.957
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.934
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.938
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.962
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.957
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.957
ELAVL2 Equus caballus ENSECAG00000020142 I 0.957
elavl2 Danio rerio ENSDARG00000040732 I 0.934
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.957
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.957
ELAVL2 Homo sapiens ENSG00000107105 D 0.957
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.953
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.957
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.925
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.957
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.906
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.898
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.906
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.906
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.897
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.907
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.906
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.906
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.898
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.897
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.911
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.915
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.906
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.906
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.906
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.906
elavl3 Danio rerio ENSDARG00000014420 I 0.906
Elavl3 Mus musculus ENSMUSG00000003410 I 0.897
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.906
ELAVL3 Homo sapiens ENSG00000196361 I 0.906
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.986
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.986
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.995
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 1.000
ELAVL4 Homo sapiens ENSG00000162374 D 1.000
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 1.000
elavl4 Danio rerio ENSDARG00000045639 I 0.977
Elavl4 Dipodomys ordii ENSDORG00000012729 I 1.000
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 1.000
ELAVL4 Canis familiaris ENSCAFG00000003927 I 1.000
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 1.000
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 1.000
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.986
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 1.000
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 1.000
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.991
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 1.000
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 1.000
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 1.000
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 1.000
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 1.000
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 1.000
Elavl4 Mus musculus ENSMUSG00000028546 I 1.000
ELAVL4 Procavia capensis ENSPCAG00000008215 I 1.000
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 1.000
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 1.000
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 1.000
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.995
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 1.000
ELAVL4 Microcebus murinus ENSMICG00000003286 I 1.000
ELAVL4 Sorex araneus ENSSARG00000010733 I 1.000
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 1.000
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 1.000
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.728
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 1.000
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.957
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.728
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.751
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.764
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.779
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.731
GD16475 Drosophila simulans FBgn0188089 N 0.000
GE18193 Drosophila yakuba FBgn0235624 I 0.731
GG12756 Drosophila erecta FBgn0105043 N 0.000
GG24901 Drosophila erecta FBgn0117030 I 0.731
GH13638 Drosophila grimshawi FBgn0121114 I 0.741
GI11879 Drosophila mojavensis FBgn0134637 I 0.731
GJ13991 Drosophila virilis FBgn0201209 I 0.731
GK14865 Drosophila willistoni FBgn0216870 I 0.731
GL26299 Drosophila persimilis FBgn0163881 I 0.745
GM18380 Drosophila sechellia FBgn0173287 I 0.731
GM19036 Drosophila sechellia FBgn0173939 N 0.000
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.962
LOC100051268 Equus caballus ENSECAG00000022284 I 1.000
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.957
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.783
Q91584 Xenopus laevis Q91584 I 0.915
Q91903 Xenopus laevis Q91903 I 0.958
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 1.000
Rbp9 Drosophila melanogaster FBgn0010263 D 0.750