XM_002878634.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_400317.1 T46121_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_400317.1 RRM 43 113
scaffold_400317.1 RRM 131 200
scaffold_400317.1 RRM 222 291
scaffold_400317.1 RRM 325 394

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29801.m003152 Ricinus communis 29801.m003152 N 0.705
30170.m013847 Ricinus communis 30170.m013847 N 0.705
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.705
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.705
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.000
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.000
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.000
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.000
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.730
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.722
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.719
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.000
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.708
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.708
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.000
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.000
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.715
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.722
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.726
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.705
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.705
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.000
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.722
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.726
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.000
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.000
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.000
MDP0000156895 Malus x domestica MDP0000156895 N 0.715
MDP0000253709 Malus x domestica MDP0000253709 N 0.715
MDP0000283985 Malus x domestica MDP0000283985 N 0.701
MDP0000497543 Malus x domestica MDP0000497543 N 0.000
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.701
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.705
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.733
mgf004973m Mimulus guttatus mgf004973m N 0.726
mgf005294m Mimulus guttatus mgf005294m N 0.000
mgf009542m Mimulus guttatus mgf009542m N 0.733
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.000
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.000
PK00659.1 Cannabis sativa PK00659.1 N 0.000
PK02172.1 Cannabis sativa PK02172.1 N 0.730
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.715
ppa002607m Prunus persica ppa002607m N 0.712
ppa002618m Prunus persica ppa002618m N 0.701
ppa002620m Prunus persica ppa002620m N 0.701
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.000
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.000