XM_002878634.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 scaffold_400317.1 T46121_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_400317.1 RRM 43 113
scaffold_400317.1 RRM 131 200
scaffold_400317.1 RRM 222 291
scaffold_400317.1 RRM 325 394

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.982
mgf009542m Mimulus guttatus mgf009542m N 0.733
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.733
PK02172.1 Cannabis sativa PK02172.1 N 0.730
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.730
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.726
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.726
mgf004973m Mimulus guttatus mgf004973m N 0.726
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.722
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.722
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.722
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.719
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.715
MDP0000156895 Malus x domestica MDP0000156895 N 0.715
MDP0000253709 Malus x domestica MDP0000253709 N 0.715
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.715
ppa002607m Prunus persica ppa002607m N 0.712
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.708
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.708
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.705
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.705
30170.m013847 Ricinus communis 30170.m013847 N 0.705
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.705
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.705
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.705
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.705
29801.m003152 Ricinus communis 29801.m003152 N 0.705
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.701
MDP0000283985 Malus x domestica MDP0000283985 N 0.701
ppa002618m Prunus persica ppa002618m N 0.701
ppa002620m Prunus persica ppa002620m N 0.701