MDP0000283985 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000283985 T57569_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000283985 RRM 36 106
MDP0000283985 RRM 124 193
MDP0000283985 RRM 215 284
MDP0000283985 RRM 318 387

Links

Other RRM family RBPs
Other Malus x domestica RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa002620m Prunus persica ppa002620m N 0.943
ppa002618m Prunus persica ppa002618m N 0.943
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.833
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.829
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.826
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.826
30170.m013847 Ricinus communis 30170.m013847 N 0.826
PK02172.1 Cannabis sativa PK02172.1 N 0.822
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.822
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.819
mgf004973m Mimulus guttatus mgf004973m N 0.815
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.811
mgf009542m Mimulus guttatus mgf009542m N 0.811
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.804
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.804
ppa002607m Prunus persica ppa002607m N 0.801
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.801
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.797
MDP0000156895 Malus x domestica MDP0000156895 N 0.797
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.797
MDP0000253709 Malus x domestica MDP0000253709 N 0.797
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.794
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.794
MDP0000497543 Malus x domestica MDP0000497543 N 0.794
29801.m003152 Ricinus communis 29801.m003152 N 0.790
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.790
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.786
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.776
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.776
PK00659.1 Cannabis sativa PK00659.1 N 0.769
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.744
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.740
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.734
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.734
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.733
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.733
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.730
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.730
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.730
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.730
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.730
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.730
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.726
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.722
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.719
mgf005294m Mimulus guttatus mgf005294m N 0.719
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.719
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.715
SB06G021850 Sorghum bicolor Sb06g021850 N 0.715
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.715
mgf004596m Mimulus guttatus mgf004596m N 0.715
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.715
MDP0000212007 Malus x domestica MDP0000212007 N 0.708
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.705
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.705
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.705
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.701
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.701
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.701