MDP0000253709 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000253709 T57509_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000253709 RRM 35 105
MDP0000253709 RRM 123 192
MDP0000253709 RRM 214 283
MDP0000253709 RRM 317 386

Links

Other RRM family RBPs
Other Malus x domestica RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000156895 Malus x domestica MDP0000156895 N 1.000
MDP0000497543 Malus x domestica MDP0000497543 N 0.961
ppa002607m Prunus persica ppa002607m N 0.907
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.883
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.879
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.872
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.858
PK02172.1 Cannabis sativa PK02172.1 N 0.858
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.858
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.854
29801.m003152 Ricinus communis 29801.m003152 N 0.854
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.851
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.851
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.843
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.833
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.833
30170.m013847 Ricinus communis 30170.m013847 N 0.829
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.826
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.826
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.826
ppa002618m Prunus persica ppa002618m N 0.822
ppa002620m Prunus persica ppa002620m N 0.822
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.808
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.808
MDP0000283985 Malus x domestica MDP0000283985 N 0.797
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.797
mgf009542m Mimulus guttatus mgf009542m N 0.794
mgf004973m Mimulus guttatus mgf004973m N 0.794
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.794
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.790
PK00659.1 Cannabis sativa PK00659.1 N 0.786
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.786
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.776
mgf005294m Mimulus guttatus mgf005294m N 0.776
mgf004596m Mimulus guttatus mgf004596m N 0.772
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.772
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.772
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.762
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.758
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.758
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.752
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.752
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.751
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.747
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.747
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.747
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.737
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.737
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.737
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.737
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.733
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.733
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.733
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.730
SB06G021850 Sorghum bicolor Sb06g021850 N 0.726
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.722
MDP0000286821 Malus x domestica MDP0000286821 N 0.719
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.719
MDP0000212007 Malus x domestica MDP0000212007 N 0.719
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.715
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.715
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.709