GSVIVG00022079001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00022079001 T44705_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00022079001 RRM 34 104
GSVIVT00022079001 RRM 122 191
GSVIVT00022079001 RRM 213 282
GSVIVT00022079001 RRM 316 385

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.872
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.865
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.851
29801.m003152 Ricinus communis 29801.m003152 N 0.851
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.851
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.847
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.843
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.840
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.840
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.833
30170.m013847 Ricinus communis 30170.m013847 N 0.829
MDP0000497543 Malus x domestica MDP0000497543 N 0.829
mgf009542m Mimulus guttatus mgf009542m N 0.826
MDP0000156895 Malus x domestica MDP0000156895 N 0.826
MDP0000253709 Malus x domestica MDP0000253709 N 0.826
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.822
ppa002607m Prunus persica ppa002607m N 0.819
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.819
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.819
mgf004973m Mimulus guttatus mgf004973m N 0.819
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.815
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.808
ppa002618m Prunus persica ppa002618m N 0.808
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.808
ppa002620m Prunus persica ppa002620m N 0.808
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.804
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.801
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.783
PK02172.1 Cannabis sativa PK02172.1 N 0.779
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.779
MDP0000283985 Malus x domestica MDP0000283985 N 0.776
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.769
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.769
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.765
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.765
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.765
PK00659.1 Cannabis sativa PK00659.1 N 0.765
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.759
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.759
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.758
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.754
mgf005294m Mimulus guttatus mgf005294m N 0.751
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.751
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.744
mgf004596m Mimulus guttatus mgf004596m N 0.744
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.740
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.740
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.740
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.740
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.737
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.733
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.730
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.730
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.730
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.730
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.726
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.726
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.726
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.722
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.720
SB06G021850 Sorghum bicolor Sb06g021850 N 0.719
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.708