cassava6947.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava6947.valid.m1 T49457_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava6947.valid.m1 RRM 26 96
cassava6947.valid.m1 RRM 114 183
cassava6947.valid.m1 RRM 205 274
cassava6947.valid.m1 RRM 308 377

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

63 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29801.m003152 Ricinus communis 29801.m003152 N 0.915
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.897
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.893
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.890
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.886
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.883
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.875
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.865
ppa002607m Prunus persica ppa002607m N 0.861
MDP0000253709 Malus x domestica MDP0000253709 N 0.854
MDP0000156895 Malus x domestica MDP0000156895 N 0.854
MDP0000497543 Malus x domestica MDP0000497543 N 0.851
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.851
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.843
30170.m013847 Ricinus communis 30170.m013847 N 0.843
PK02172.1 Cannabis sativa PK02172.1 N 0.840
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.836
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.836
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.836
ppa002618m Prunus persica ppa002618m N 0.833
ppa002620m Prunus persica ppa002620m N 0.833
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.826
mgf004973m Mimulus guttatus mgf004973m N 0.811
mgf009542m Mimulus guttatus mgf009542m N 0.804
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.804
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.801
MDP0000283985 Malus x domestica MDP0000283985 N 0.801
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.801
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.801
mgf004596m Mimulus guttatus mgf004596m N 0.786
mgf005294m Mimulus guttatus mgf005294m N 0.786
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.786
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.783
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.779
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.772
PK00659.1 Cannabis sativa PK00659.1 N 0.769
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.765
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.765
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.765
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.762
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.762
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.762
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.762
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.754
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.754
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.752
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.752
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.751
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.747
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.747
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.744
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.744
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.744
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.740
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.737
SB06G021850 Sorghum bicolor Sb06g021850 N 0.737
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.723
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.722
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.722
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.719
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.708
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.708
28644.m000904 Ricinus communis 28644.m000904 N 0.705