PK02172.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK02172.1 T31627_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK02172.1 RRM 51 121
PK02172.1 RRM 139 208
PK02172.1 RRM 230 299
PK02172.1 RRM 333 402

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa002607m Prunus persica ppa002607m N 0.879
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.875
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.868
MDP0000156895 Malus x domestica MDP0000156895 N 0.858
MDP0000253709 Malus x domestica MDP0000253709 N 0.858
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.858
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.854
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.851
MDP0000497543 Malus x domestica MDP0000497543 N 0.840
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.840
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.833
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.833
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.829
mgf009542m Mimulus guttatus mgf009542m N 0.829
29801.m003152 Ricinus communis 29801.m003152 N 0.826
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.826
30170.m013847 Ricinus communis 30170.m013847 N 0.826
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.826
ppa002620m Prunus persica ppa002620m N 0.822
ppa002618m Prunus persica ppa002618m N 0.822
MDP0000283985 Malus x domestica MDP0000283985 N 0.822
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.819
mgf004973m Mimulus guttatus mgf004973m N 0.815
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.811
PK00659.1 Cannabis sativa PK00659.1 N 0.804
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.801
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.801
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.794
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.783
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.779
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.779
mgf005294m Mimulus guttatus mgf005294m N 0.769
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.766
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.766
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.762
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.762
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.762
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.754
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.751
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.747
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.747
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.747
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.747
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.747
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.747
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.747
SB06G021850 Sorghum bicolor Sb06g021850 N 0.744
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.744
mgf004596m Mimulus guttatus mgf004596m N 0.744
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.740
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.740
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.740
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.737
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.733
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.730
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.730
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.730
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.730
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.708
MDP0000286821 Malus x domestica MDP0000286821 N 0.708
MDP0000212007 Malus x domestica MDP0000212007 N 0.708
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.705
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.705
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.701