mgf004973m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf004973m T53617_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf004973m RRM 32 102
mgf004973m RRM 120 189
mgf004973m RRM 211 280
mgf004973m RRM 314 383

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf009542m Mimulus guttatus mgf009542m N 0.907
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.858
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.851
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.843
ppa002620m Prunus persica ppa002620m N 0.840
ppa002618m Prunus persica ppa002618m N 0.840
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.829
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.826
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.826
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.826
30170.m013847 Ricinus communis 30170.m013847 N 0.822
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.822
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.819
PK02172.1 Cannabis sativa PK02172.1 N 0.815
MDP0000283985 Malus x domestica MDP0000283985 N 0.815
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.811
29801.m003152 Ricinus communis 29801.m003152 N 0.811
ppa002607m Prunus persica ppa002607m N 0.808
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.804
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.804
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.801
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.801
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.797
MDP0000156895 Malus x domestica MDP0000156895 N 0.794
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.794
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.794
MDP0000253709 Malus x domestica MDP0000253709 N 0.794
MDP0000497543 Malus x domestica MDP0000497543 N 0.790
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.772
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.769
PK00659.1 Cannabis sativa PK00659.1 N 0.762
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.758
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.758
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.758
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.758
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.748
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.748
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.747
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.740
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.740
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.737
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.733
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.733
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.730
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.730
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.726
mgf004596m Mimulus guttatus mgf004596m N 0.726
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.726
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.726
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.726
mgf005294m Mimulus guttatus mgf005294m N 0.726
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.722
SB06G021850 Sorghum bicolor Sb06g021850 N 0.722
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.719
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.719
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.719
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.719
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.715
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.715
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.715
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.713
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.705