79994 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 79994 T48875_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
79994 RRM 35 102
79994 RRM 143 204

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.721
ADH10187 Xenopus laevis ADH10187 I 0.721
AGAP002296 Anopheles gambiae AGAP002296 I 0.752
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.741
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.707
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.733
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.721
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.756
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.733
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.733
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.726
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.733
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.726
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.711
CPEB2 Gallus gallus ENSGALG00000014516 I 0.733
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.733
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.733
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.733
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.733
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.733
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.733
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.733
CPEB2 Equus caballus ENSECAG00000008722 I 0.733
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.726
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.733
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.733
CPEB2 Homo sapiens ENSG00000137449 D 0.733
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.726
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.733
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.733
CPEB2 Bos taurus ENSBTAG00000019847 I 0.733
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.733
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.733
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.733
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.707
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.707
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.707
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.707
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.707
CPEB3 Sorex araneus ENSSARG00000001994 I 0.702
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.727
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.707
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.707
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.707
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.707
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.702
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.707
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.707
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.707
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.707
CPEB3 Equus caballus ENSECAG00000000077 I 0.702
CPEB3 Homo sapiens ENSG00000107864 I 0.707
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.702
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.707
CPEB3 Gallus gallus ENSGALG00000006912 I 0.707
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.707
CPEB3 Bos taurus ENSBTAG00000015450 I 0.707
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.707
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.707
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.707
CPEB4 Sorex araneus ENSSARG00000013389 I 0.707
CPEB4 Danio rerio ENSDARG00000060495 I 0.707
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.721
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.721
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.700
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.721
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.721
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.721
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.721
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.721
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.721
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.721
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.716
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.707
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.707
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.721
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.707
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.721
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.721
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.721
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.707
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.711
CPEB4 Gallus gallus ENSGALG00000014074 I 0.711
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.721
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.721
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.721
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.721
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.714
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.711
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.721
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.721
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.700
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.707
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.721
CPEB4 Homo sapiens ENSG00000113742 D 0.721
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.707
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.748
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.733
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.754
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.707
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.733
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.721
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.719
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.748
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.733
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.722
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.741
GE21274 Drosophila yakuba FBgn0238542 I 0.741
GF10140 Drosophila ananassae FBgn0087181 I 0.741
GG15051 Drosophila erecta FBgn0107305 I 0.741
GH16131 Drosophila grimshawi FBgn0123602 I 0.741
GI12400 Drosophila mojavensis FBgn0135157 I 0.741
GJ12289 Drosophila virilis FBgn0199538 I 0.741
GK17460 Drosophila willistoni FBgn0219459 I 0.741
GL20808 Drosophila persimilis FBgn0158403 I 0.741
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.728
ISCW010113 Ixodes scapularis ISCW010113 I 0.763
LOC100058918 Equus caballus ENSECAG00000016921 I 0.721
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.707
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.733
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.723
orb2 Drosophila melanogaster FBgn0262573 D 0.741
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.739
PHUM335520 Pediculus humanus PHUM335520 I 0.763
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.731
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.726
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.726
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.733