D3ZHK8_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000005043 T41036_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.921
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.876
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.857
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000006727 RRM 200 272
ENSRNOP00000006727 RRM 315 379

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

149 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.935
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.935
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.935
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.935
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.935
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.935
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.935
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.935
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.935
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.935
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.935
CPEB2 Gallus gallus ENSGALG00000014516 I 0.935
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.935
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.935
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.935
CPEB2 Bos taurus ENSBTAG00000019847 I 0.935
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.935
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.935
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.935
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.935
CPEB2 Homo sapiens ENSG00000137449 D 0.935
CPEB2 Equus caballus ENSECAG00000008722 I 0.935
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.935
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.935
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.928
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.928
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.914
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.913
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.907
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.906
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.902
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.902
CPEB4 Homo sapiens ENSG00000113742 D 0.902
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.902
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.902
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.902
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.902
ADH10187 Xenopus laevis ADH10187 I 0.902
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.902
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.902
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.902
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.902
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.902
LOC100058918 Equus caballus ENSECAG00000016921 I 0.902
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.902
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.902
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.902
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.902
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.902
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.902
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.902
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.902
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.902
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.902
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.902
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.899
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.899
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.896
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.896
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.896
CPEB3 Gallus gallus ENSGALG00000006912 I 0.896
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.896
CPEB3 Bos taurus ENSBTAG00000015450 I 0.896
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.896
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.896
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.896
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.896
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.896
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.896
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.896
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.896
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.896
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.896
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.896
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.896
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.896
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.896
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.896
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.896
CPEB3 Homo sapiens ENSG00000107864 I 0.896
CPEB4 Danio rerio ENSDARG00000060495 I 0.895
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.895
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.895
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.895
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.895
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.892
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.891
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.890
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.890
CPEB4 Gallus gallus ENSGALG00000014074 I 0.890
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.890
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.890
CPEB3 Equus caballus ENSECAG00000000077 I 0.890
CPEB3 Sorex araneus ENSSARG00000001994 I 0.890
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.889
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.889
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.889
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.888
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.888
CPEB4 Sorex araneus ENSSARG00000013389 I 0.888
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.888
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.886
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.886
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.885
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.885
GF10140 Drosophila ananassae FBgn0087181 I 0.884
cpeb3 Danio rerio ENSDARG00000060103 I 0.883
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.882
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.881
ISCW010113 Ixodes scapularis ISCW010113 I 0.879
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.878
GJ12289 Drosophila virilis FBgn0199538 I 0.877
GL20808 Drosophila persimilis FBgn0158403 I 0.877
GE21274 Drosophila yakuba FBgn0238542 I 0.877
GK17460 Drosophila willistoni FBgn0219459 I 0.877
GH16131 Drosophila grimshawi FBgn0123602 I 0.877
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.877
GG15051 Drosophila erecta FBgn0107305 I 0.877
GI12400 Drosophila mojavensis FBgn0135157 I 0.877
orb2 Drosophila melanogaster FBgn0262573 D 0.877
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.876
PHUM335520 Pediculus humanus PHUM335520 I 0.870
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.869
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.868
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.863
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.855
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.848
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.848
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.847
CPEB2 Sorex araneus ENSSARG00000010559 I 0.842
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.842
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.823
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.816
CPEB2 Danio rerio ENSDARG00000052604 I 0.807
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.806
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.806
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.804
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.799
AGAP002296 Anopheles gambiae AGAP002296 I 0.797
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.790
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.788
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.768
111676 Helobdella robusta 111676 I 0.748
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.736
AAEL012065 Aedes aegypti AAEL012065 I 0.719
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.707
79994 Helobdella robusta 79994 I 0.707
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.706
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.706