PHUM335520 (Pediculus humanus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PHUM335520 T45349_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.931
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.902
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.883
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PHUM335520-PA RRM 403 467
PHUM335520-PA RRM 511 575

Links

Other RRM family RBPs
Other Pediculus humanus RBPs

149 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.954
GH16131 Drosophila grimshawi FBgn0123602 I 0.938
GI12400 Drosophila mojavensis FBgn0135157 I 0.931
GG15051 Drosophila erecta FBgn0107305 I 0.931
GL20808 Drosophila persimilis FBgn0158403 I 0.931
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.931
GJ12289 Drosophila virilis FBgn0199538 I 0.931
GE21274 Drosophila yakuba FBgn0238542 I 0.931
orb2 Drosophila melanogaster FBgn0262573 D 0.931
GK17460 Drosophila willistoni FBgn0219459 I 0.931
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.924
GF10140 Drosophila ananassae FBgn0087181 I 0.924
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.917
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.916
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.916
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.916
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.916
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.916
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.916
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.916
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.916
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.916
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.916
CPEB2 Homo sapiens ENSG00000137449 D 0.916
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.916
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.916
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.916
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.916
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.916
CPEB2 Equus caballus ENSECAG00000008722 I 0.916
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.916
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.916
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.916
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.916
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.916
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.916
CPEB2 Gallus gallus ENSGALG00000014516 I 0.916
CPEB2 Bos taurus ENSBTAG00000019847 I 0.916
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.908
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.904
ISCW010113 Ixodes scapularis ISCW010113 I 0.902
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.902
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.897
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.897
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.897
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.897
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.897
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.897
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.897
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.897
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.897
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.897
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.897
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.897
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.897
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.897
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.897
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.897
ADH10187 Xenopus laevis ADH10187 I 0.897
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.897
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.897
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.897
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.897
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.897
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.897
LOC100058918 Equus caballus ENSECAG00000016921 I 0.897
CPEB4 Homo sapiens ENSG00000113742 D 0.897
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.895
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.892
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.891
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.891
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.890
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.890
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.890
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.886
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.886
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.886
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.885
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.884
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.884
CPEB4 Gallus gallus ENSGALG00000014074 I 0.884
CPEB4 Sorex araneus ENSSARG00000013389 I 0.882
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.882
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.882
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.882
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.882
CPEB4 Danio rerio ENSDARG00000060495 I 0.882
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.882
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.880
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.880
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.879
CPEB3 Gallus gallus ENSGALG00000006912 I 0.875
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.875
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.875
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.875
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.875
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.875
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.875
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.875
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.875
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.875
CPEB3 Bos taurus ENSBTAG00000015450 I 0.875
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.875
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.875
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.875
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.875
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.875
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.875
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.875
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.875
CPEB3 Homo sapiens ENSG00000107864 I 0.875
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.875
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.875
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.875
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.870
CPEB3 Equus caballus ENSECAG00000000077 I 0.869
CPEB3 Sorex araneus ENSSARG00000001994 I 0.869
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.869
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.869
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.868
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.863
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.863
cpeb3 Danio rerio ENSDARG00000060103 I 0.861
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.860
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.856
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.852
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.848
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.847
AGAP002296 Anopheles gambiae AGAP002296 I 0.841
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.841
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.839
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.837
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.833
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.824
CPEB2 Sorex araneus ENSSARG00000010559 I 0.817
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.817
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.796
CPEB2 Danio rerio ENSDARG00000052604 I 0.795
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.794
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.788
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.788
111676 Helobdella robusta 111676 I 0.766
79994 Helobdella robusta 79994 I 0.763
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.750
AAEL012065 Aedes aegypti AAEL012065 I 0.737
69117 Helobdella robusta 69117 N 0.714
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.710
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.706
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.706