fgenesh2_pg.scaffold_143000050 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.scaffold_143000050 T52218_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.933
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.902
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.899
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_143000050 RRM 92 158
fgenesh2_pg.scaffold_143000050 RRM 200 264

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

152 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.992
CPEB2 Gallus gallus ENSGALG00000014516 I 0.962
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.962
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.962
CPEB2 Homo sapiens ENSG00000137449 D 0.962
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.962
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.962
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.962
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.962
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.962
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.962
CPEB2 Equus caballus ENSECAG00000008722 I 0.962
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.962
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.962
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.962
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.962
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.962
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.962
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.962
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.962
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.962
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.962
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.962
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.962
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.962
CPEB2 Bos taurus ENSBTAG00000019847 I 0.962
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.955
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.955
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.955
ISCW010113 Ixodes scapularis ISCW010113 I 0.947
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.927
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.927
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.927
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.927
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.927
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.927
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.927
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.927
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.927
ADH10187 Xenopus laevis ADH10187 I 0.927
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.927
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.927
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.927
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.927
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.927
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.927
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.927
LOC100058918 Equus caballus ENSECAG00000016921 I 0.927
CPEB4 Homo sapiens ENSG00000113742 D 0.927
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.927
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.927
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.927
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.927
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.927
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.927
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.924
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.924
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.924
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.924
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.920
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.920
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.920
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.920
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.920
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.920
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.920
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.920
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.920
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.920
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.920
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.920
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.920
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.920
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.920
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.920
CPEB4 Danio rerio ENSDARG00000060495 I 0.920
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.920
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.920
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.920
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.920
CPEB3 Homo sapiens ENSG00000107864 I 0.920
CPEB3 Gallus gallus ENSGALG00000006912 I 0.920
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.920
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.920
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.920
CPEB3 Bos taurus ENSBTAG00000015450 I 0.920
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.920
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.920
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.920
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.920
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.920
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.920
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.917
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.917
GF10140 Drosophila ananassae FBgn0087181 I 0.917
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.917
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.917
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.914
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.914
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.914
CPEB4 Gallus gallus ENSGALG00000014074 I 0.914
CPEB3 Sorex araneus ENSSARG00000001994 I 0.913
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.913
CPEB3 Equus caballus ENSECAG00000000077 I 0.913
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.913
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.912
CPEB4 Sorex araneus ENSSARG00000013389 I 0.912
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.912
GH16131 Drosophila grimshawi FBgn0123602 I 0.909
GI12400 Drosophila mojavensis FBgn0135157 I 0.909
GL20808 Drosophila persimilis FBgn0158403 I 0.909
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.909
GJ12289 Drosophila virilis FBgn0199538 I 0.909
GE21274 Drosophila yakuba FBgn0238542 I 0.909
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.909
GG15051 Drosophila erecta FBgn0107305 I 0.909
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.909
GK17460 Drosophila willistoni FBgn0219459 I 0.909
orb2 Drosophila melanogaster FBgn0262573 D 0.909
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.906
cpeb3 Danio rerio ENSDARG00000060103 I 0.906
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.905
PHUM335520 Pediculus humanus PHUM335520 I 0.902
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.902
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.902
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.899
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.898
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.884
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.882
CPEB2 Sorex araneus ENSSARG00000010559 I 0.871
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.871
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.871
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.853
CPEB2 Danio rerio ENSDARG00000052604 I 0.835
AGAP002296 Anopheles gambiae AGAP002296 I 0.828
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.826
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.826
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.825
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.813
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.813
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.791
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.789
111676 Helobdella robusta 111676 I 0.777
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.757
AAEL012065 Aedes aegypti AAEL012065 I 0.748
79994 Helobdella robusta 79994 I 0.733
69117 Helobdella robusta 69117 N 0.731
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.730
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.730
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.720
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.708
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.708