PASA_GEN_0800168 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PASA_GEN_0800168 T53849_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.872
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.859
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PASA_GEN_0800168 RRM 46 113
PASA_GEN_0800168 RRM 154 218

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

146 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.887
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.882
ISCW010113 Ixodes scapularis ISCW010113 I 0.875
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.867
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.859
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.859
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.859
CPEB2 Homo sapiens ENSG00000137449 D 0.859
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.859
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.859
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.859
CPEB2 Equus caballus ENSECAG00000008722 I 0.859
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.859
CPEB2 Gallus gallus ENSGALG00000014516 I 0.859
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.859
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.859
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.859
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.859
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.859
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.859
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.859
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.859
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.859
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.859
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.859
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.859
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.859
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.859
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.859
CPEB2 Bos taurus ENSBTAG00000019847 I 0.859
AGAP002296 Anopheles gambiae AGAP002296 I 0.857
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.853
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.853
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.853
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.853
PHUM335520 Pediculus humanus PHUM335520 I 0.852
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.847
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.846
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.846
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.846
GH16131 Drosophila grimshawi FBgn0123602 I 0.844
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.838
GG15051 Drosophila erecta FBgn0107305 I 0.838
GI12400 Drosophila mojavensis FBgn0135157 I 0.838
GJ12289 Drosophila virilis FBgn0199538 I 0.838
GL20808 Drosophila persimilis FBgn0158403 I 0.838
GK17460 Drosophila willistoni FBgn0219459 I 0.838
orb2 Drosophila melanogaster FBgn0262573 D 0.838
GE21274 Drosophila yakuba FBgn0238542 I 0.838
GF10140 Drosophila ananassae FBgn0087181 I 0.831
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.831
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.829
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.829
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.829
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.829
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.829
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.829
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.829
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.829
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.829
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.829
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.829
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.829
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.829
CPEB3 Homo sapiens ENSG00000107864 I 0.829
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.829
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.829
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.829
CPEB3 Gallus gallus ENSGALG00000006912 I 0.829
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.829
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.829
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.829
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.829
CPEB3 Bos taurus ENSBTAG00000015450 I 0.829
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.829
CPEB3 Sorex araneus ENSSARG00000001994 I 0.823
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.823
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.823
CPEB3 Equus caballus ENSECAG00000000077 I 0.823
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.823
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.822
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.820
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.817
cpeb3 Danio rerio ENSDARG00000060103 I 0.816
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.816
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.816
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.815
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.815
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.814
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.810
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.809
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.809
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.809
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.809
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.809
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.809
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.801
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.801
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.801
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.801
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.801
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.801
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.801
CPEB4 Homo sapiens ENSG00000113742 D 0.801
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.801
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.801
LOC100058918 Equus caballus ENSECAG00000016921 I 0.801
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.801
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.801
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.801
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.801
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.801
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.801
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.801
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.801
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.801
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.801
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.801
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.801
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.801
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.801
CPEB4 Danio rerio ENSDARG00000060495 I 0.801
ADH10187 Xenopus laevis ADH10187 I 0.801
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.801
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.801
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.801
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.796
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.794
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.794
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.790
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.790
CPEB4 Gallus gallus ENSGALG00000014074 I 0.790
CPEB4 Sorex araneus ENSSARG00000013389 I 0.787
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.783
AAEL012065 Aedes aegypti AAEL012065 I 0.782
111676 Helobdella robusta 111676 I 0.775
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.774
CPEB2 Sorex araneus ENSSARG00000010559 I 0.770
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.770
CPEB2 Danio rerio ENSDARG00000052604 I 0.765
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.757
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.750
79994 Helobdella robusta 79994 I 0.739
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.736
69117 Helobdella robusta 69117 N 0.724
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.704