CPEB2 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000013966 T37515_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.925
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.881
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.878
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000018443 RRM 313 379
ENSGACP00000018443 RRM 422 486

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

152 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.977
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.977
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.970
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.940
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.940
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.940
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.940
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.940
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.940
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.940
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.940
CPEB2 Bos taurus ENSBTAG00000019847 I 0.940
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.940
CPEB2 Equus caballus ENSECAG00000008722 I 0.940
CPEB2 Homo sapiens ENSG00000137449 D 0.940
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.940
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.940
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.940
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.940
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.940
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.940
CPEB2 Gallus gallus ENSGALG00000014516 I 0.940
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.940
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.940
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.940
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.940
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.940
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.932
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.932
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.917
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.913
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.912
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.912
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.912
CPEB4 Danio rerio ENSDARG00000060495 I 0.912
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.910
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.910
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.909
cpeb3 Danio rerio ENSDARG00000060103 I 0.906
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.906
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.906
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.906
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.906
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.906
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.906
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.906
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.906
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.906
CPEB3 Bos taurus ENSBTAG00000015450 I 0.906
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.906
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.906
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.906
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.906
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.906
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.906
CPEB3 Homo sapiens ENSG00000107864 I 0.906
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.906
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.906
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.906
CPEB3 Gallus gallus ENSGALG00000006912 I 0.906
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.906
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.906
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.906
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.906
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.905
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.905
CPEB4 Homo sapiens ENSG00000113742 D 0.905
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.905
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.905
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.905
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.905
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.905
ADH10187 Xenopus laevis ADH10187 I 0.905
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.905
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.905
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.905
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.905
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.905
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.905
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.905
LOC100058918 Equus caballus ENSECAG00000016921 I 0.905
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.905
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.905
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.905
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.905
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.905
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.905
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.905
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.905
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.905
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.905
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.905
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.902
GF10140 Drosophila ananassae FBgn0087181 I 0.902
CPEB3 Equus caballus ENSECAG00000000077 I 0.899
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.899
CPEB3 Sorex araneus ENSSARG00000001994 I 0.899
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.899
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.899
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.899
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.899
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.899
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.898
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.898
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.896
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.896
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.895
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.895
orb2 Drosophila melanogaster FBgn0262573 D 0.894
GH16131 Drosophila grimshawi FBgn0123602 I 0.894
GG15051 Drosophila erecta FBgn0107305 I 0.894
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.894
GI12400 Drosophila mojavensis FBgn0135157 I 0.894
GE21274 Drosophila yakuba FBgn0238542 I 0.894
GK17460 Drosophila willistoni FBgn0219459 I 0.894
GJ12289 Drosophila virilis FBgn0199538 I 0.894
GL20808 Drosophila persimilis FBgn0158403 I 0.894
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.892
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.892
CPEB4 Gallus gallus ENSGALG00000014074 I 0.892
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.891
CPEB4 Sorex araneus ENSSARG00000013389 I 0.891
PHUM335520 Pediculus humanus PHUM335520 I 0.886
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.886
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.886
ISCW010113 Ixodes scapularis ISCW010113 I 0.881
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.872
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.871
CPEB2 Danio rerio ENSDARG00000052604 I 0.858
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.855
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.846
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.842
CPEB2 Sorex araneus ENSSARG00000010559 I 0.842
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.838
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.835
AGAP002296 Anopheles gambiae AGAP002296 I 0.835
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.819
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.804
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.797
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.787
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.783
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.774
AAEL012065 Aedes aegypti AAEL012065 I 0.754
111676 Helobdella robusta 111676 I 0.754
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.741
79994 Helobdella robusta 79994 I 0.726
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.715
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.715
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.711
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.708
69117 Helobdella robusta 69117 N 0.707
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.701