CPEB2 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000013956 T42343_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.910
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.880
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.863
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000035685 RRM 306 372
ENSTRUP00000035685 RRM 414 478
ENSTRUP00000035686 RRM 287 353
ENSTRUP00000035686 RRM 395 459
ENSTRUP00000035687 RRM 258 324
ENSTRUP00000035687 RRM 366 430
ENSTRUP00000035688 RRM 176 242
ENSTRUP00000035688 RRM 284 348

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

152 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.992
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.992
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.970
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.955
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.947
CPEB2 Homo sapiens ENSG00000137449 D 0.947
CPEB2 Equus caballus ENSECAG00000008722 I 0.947
CPEB2 Gallus gallus ENSGALG00000014516 I 0.947
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.947
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.947
CPEB2 Bos taurus ENSBTAG00000019847 I 0.947
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.947
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.947
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.947
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.947
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.947
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.947
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.947
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.947
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.947
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.947
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.947
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.947
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.947
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.947
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.947
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.947
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.947
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.939
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.935
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.934
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.924
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.920
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.920
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.917
cpeb3 Danio rerio ENSDARG00000060103 I 0.913
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.912
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.912
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.912
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.912
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.912
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.912
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.912
CPEB3 Homo sapiens ENSG00000107864 I 0.912
CPEB3 Gallus gallus ENSGALG00000006912 I 0.912
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.912
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.912
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.912
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.912
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.912
CPEB3 Bos taurus ENSBTAG00000015450 I 0.912
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.912
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.912
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.912
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.912
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.912
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.912
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.912
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.912
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.910
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.910
CPEB3 Equus caballus ENSECAG00000000077 I 0.906
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.906
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.906
CPEB3 Sorex araneus ENSSARG00000001994 I 0.906
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.905
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.902
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.902
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.902
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.902
CPEB4 Danio rerio ENSDARG00000060495 I 0.898
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.898
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.898
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.898
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.898
ISCW010113 Ixodes scapularis ISCW010113 I 0.895
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.894
GF10140 Drosophila ananassae FBgn0087181 I 0.894
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.892
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.891
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.891
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.891
ADH10187 Xenopus laevis ADH10187 I 0.891
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.891
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.891
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.891
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.891
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.891
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.891
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.891
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.891
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.891
CPEB4 Homo sapiens ENSG00000113742 D 0.891
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.891
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.891
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.891
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.891
LOC100058918 Equus caballus ENSECAG00000016921 I 0.891
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.891
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.891
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.891
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.891
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.891
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.891
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.891
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.891
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.891
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.891
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.886
GJ12289 Drosophila virilis FBgn0199538 I 0.886
GL20808 Drosophila persimilis FBgn0158403 I 0.886
GE21274 Drosophila yakuba FBgn0238542 I 0.886
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.886
orb2 Drosophila melanogaster FBgn0262573 D 0.886
GI12400 Drosophila mojavensis FBgn0135157 I 0.886
GG15051 Drosophila erecta FBgn0107305 I 0.886
GH16131 Drosophila grimshawi FBgn0123602 I 0.886
GK17460 Drosophila willistoni FBgn0219459 I 0.886
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.884
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.883
CPEB2 Danio rerio ENSDARG00000052604 I 0.880
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.879
PHUM335520 Pediculus humanus PHUM335520 I 0.879
CPEB4 Gallus gallus ENSGALG00000014074 I 0.878
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.878
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.878
CPEB4 Sorex araneus ENSSARG00000013389 I 0.876
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.872
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.871
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.855
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.853
CPEB2 Sorex araneus ENSSARG00000010559 I 0.848
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.848
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.846
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.828
AGAP002296 Anopheles gambiae AGAP002296 I 0.828
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.825
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.797
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.783
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.777
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.775
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.769
111676 Helobdella robusta 111676 I 0.748
AAEL012065 Aedes aegypti AAEL012065 I 0.748
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.729
79994 Helobdella robusta 79994 I 0.726
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.715
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.715
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.708
69117 Helobdella robusta 69117 N 0.701
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.701