CPEB3 (Pteropus vampyrus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPVAG00000007664 T40899_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.917
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.870
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.850
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000007237 RRM 442 507
ENSPVAP00000007237 RRM 550 610

Links

Other RRM family RBPs
Other Pteropus vampyrus RBPs

147 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB2 Gallus gallus ENSGALG00000014516 I 0.947
CPEB2 Homo sapiens ENSG00000137449 D 0.947
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.947
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.947
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.947
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.947
CPEB2 Equus caballus ENSECAG00000008722 I 0.947
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.947
CPEB2 Bos taurus ENSBTAG00000019847 I 0.947
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.947
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.947
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.947
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.947
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.947
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.947
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.947
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.947
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.947
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.947
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.947
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.947
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.947
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.947
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.947
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.939
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.939
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.919
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.919
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.919
CPEB3 Bos taurus ENSBTAG00000015450 I 0.919
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.919
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.919
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.919
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.919
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.919
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.919
CPEB3 Gallus gallus ENSGALG00000006912 I 0.919
CPEB3 Homo sapiens ENSG00000107864 I 0.919
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.919
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.919
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.919
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.919
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.919
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.919
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.919
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.919
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.919
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.919
CPEB3 Equus caballus ENSECAG00000000077 I 0.912
CPEB3 Sorex araneus ENSSARG00000001994 I 0.912
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.912
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.912
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.912
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.912
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.909
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.909
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.909
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.902
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.902
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.901
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.895
cpeb3 Danio rerio ENSDARG00000060103 I 0.891
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.890
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.887
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.887
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.885
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.885
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.883
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.883
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.883
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.883
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.883
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.883
LOC100058918 Equus caballus ENSECAG00000016921 I 0.883
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.883
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.883
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.883
CPEB4 Homo sapiens ENSG00000113742 D 0.883
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.883
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.883
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.883
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.883
ADH10187 Xenopus laevis ADH10187 I 0.883
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.883
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.883
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.883
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.883
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.883
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.883
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.883
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.883
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.883
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.883
ISCW010113 Ixodes scapularis ISCW010113 I 0.880
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.879
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.877
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.877
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.877
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.876
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.876
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.876
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.876
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.876
CPEB4 Danio rerio ENSDARG00000060495 I 0.876
GF10140 Drosophila ananassae FBgn0087181 I 0.871
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.871
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.871
CPEB4 Gallus gallus ENSGALG00000014074 I 0.871
GH16131 Drosophila grimshawi FBgn0123602 I 0.870
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.869
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.869
CPEB4 Sorex araneus ENSSARG00000013389 I 0.869
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.869
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.869
GI12400 Drosophila mojavensis FBgn0135157 I 0.864
GK17460 Drosophila willistoni FBgn0219459 I 0.864
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.864
orb2 Drosophila melanogaster FBgn0262573 D 0.864
GE21274 Drosophila yakuba FBgn0238542 I 0.864
GJ12289 Drosophila virilis FBgn0199538 I 0.864
GL20808 Drosophila persimilis FBgn0158403 I 0.864
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.864
GG15051 Drosophila erecta FBgn0107305 I 0.864
PHUM335520 Pediculus humanus PHUM335520 I 0.863
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.863
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.850
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.847
CPEB2 Sorex araneus ENSSARG00000010559 I 0.847
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.841
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.839
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.833
CPEB2 Danio rerio ENSDARG00000052604 I 0.826
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.824
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.822
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.816
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.815
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.796
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.792
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.789
AGAP002296 Anopheles gambiae AGAP002296 I 0.782
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.775
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.775
111676 Helobdella robusta 111676 I 0.732
79994 Helobdella robusta 79994 I 0.727
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.712
69117 Helobdella robusta 69117 N 0.712
AAEL012065 Aedes aegypti AAEL012065 I 0.701