DGIL_AUG5s10609g1t1 (Acyrtosiphon pisum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 DGIL_AUG5s10609g1t1 T31968_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.954
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.924
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.891
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
DGIL_AUG5s10609g1t1 RRM 110 174
DGIL_AUG5s10609g1t1 RRM 218 282

Links

Other RRM family RBPs
Other Acyrtosiphon pisum RBPs

152 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GH16131 Drosophila grimshawi FBgn0123602 I 0.962
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.955
GJ12289 Drosophila virilis FBgn0199538 I 0.954
GE21274 Drosophila yakuba FBgn0238542 I 0.954
GL20808 Drosophila persimilis FBgn0158403 I 0.954
GK17460 Drosophila willistoni FBgn0219459 I 0.954
GI12400 Drosophila mojavensis FBgn0135157 I 0.954
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.954
GG15051 Drosophila erecta FBgn0107305 I 0.954
orb2 Drosophila melanogaster FBgn0262573 D 0.954
PHUM335520 Pediculus humanus PHUM335520 I 0.954
GF10140 Drosophila ananassae FBgn0087181 I 0.947
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.939
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.939
CPEB2 Homo sapiens ENSG00000137449 D 0.939
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.939
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.939
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.939
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.939
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.939
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.939
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.939
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.939
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.939
CPEB2 Gallus gallus ENSGALG00000014516 I 0.939
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.939
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.939
CPEB2 Bos taurus ENSBTAG00000019847 I 0.939
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.939
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.939
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.939
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.939
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.939
CPEB2 Equus caballus ENSECAG00000008722 I 0.939
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.939
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.939
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.939
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.934
ISCW010113 Ixodes scapularis ISCW010113 I 0.932
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.932
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.931
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.924
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.917
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.915
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.912
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.912
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.912
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.912
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.910
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.910
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.904
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.904
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.904
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.904
CPEB4 Danio rerio ENSDARG00000060495 I 0.904
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.904
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.904
LOC100058918 Equus caballus ENSECAG00000016921 I 0.904
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.904
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.904
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.904
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.904
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.904
CPEB4 Homo sapiens ENSG00000113742 D 0.904
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.904
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.904
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.904
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.904
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.904
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.904
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.904
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.904
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.904
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.904
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.904
ADH10187 Xenopus laevis ADH10187 I 0.904
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.904
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.904
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.904
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.902
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.902
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.902
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.898
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.898
CPEB3 Homo sapiens ENSG00000107864 I 0.897
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.897
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.897
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.897
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.897
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.897
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.897
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.897
CPEB3 Bos taurus ENSBTAG00000015450 I 0.897
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.897
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.897
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.897
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.897
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.897
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.897
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.897
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.897
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.897
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.897
CPEB3 Gallus gallus ENSGALG00000006912 I 0.897
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.897
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.897
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.897
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.897
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.894
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.891
CPEB4 Gallus gallus ENSGALG00000014074 I 0.891
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.891
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.891
CPEB3 Equus caballus ENSECAG00000000077 I 0.891
cpeb3 Danio rerio ENSDARG00000060103 I 0.891
CPEB3 Sorex araneus ENSSARG00000001994 I 0.891
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.891
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.891
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.890
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.890
CPEB4 Sorex araneus ENSSARG00000013389 I 0.890
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.885
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.885
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.879
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.877
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.870
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.870
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.869
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.867
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.863
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.852
AGAP002296 Anopheles gambiae AGAP002296 I 0.841
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.840
CPEB2 Sorex araneus ENSSARG00000010559 I 0.840
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.831
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.818
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.816
CPEB2 Danio rerio ENSDARG00000052604 I 0.811
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.810
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.796
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.788
111676 Helobdella robusta 111676 I 0.774
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.771
AAEL012065 Aedes aegypti AAEL012065 I 0.752
79994 Helobdella robusta 79994 I 0.748
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.739
69117 Helobdella robusta 69117 N 0.722
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.721
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.721
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.709
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.706
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.704