XP_789277.1 (Strongylocentrotus purpuratus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 XP_789277.1 T59252_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.918
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.887
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.885
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
XP_789277.1 RRM 424 491
XP_789277.1 RRM 532 596

Links

Other RRM family RBPs
Other Strongylocentrotus purpuratus RBPs

151 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 1.000
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.955
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.948
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.940
CPEB2 Gallus gallus ENSGALG00000014516 I 0.940
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.940
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.940
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.940
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.940
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.940
CPEB2 Equus caballus ENSECAG00000008722 I 0.940
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.940
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.940
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.940
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.940
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.940
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.940
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.940
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.940
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.940
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.940
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.940
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.940
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.940
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.940
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.940
CPEB2 Bos taurus ENSBTAG00000019847 I 0.940
CPEB2 Homo sapiens ENSG00000137449 D 0.940
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.932
ISCW010113 Ixodes scapularis ISCW010113 I 0.932
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.910
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.910
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.910
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.910
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.910
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.899
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.899
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.899
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.899
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.899
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.899
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.899
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.899
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.899
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.899
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.899
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.899
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.899
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.899
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.899
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.899
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.899
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.899
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.899
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.899
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.899
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.899
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.899
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.899
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.899
ADH10187 Xenopus laevis ADH10187 I 0.899
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.899
CPEB4 Danio rerio ENSDARG00000060495 I 0.899
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.899
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.899
LOC100058918 Equus caballus ENSECAG00000016921 I 0.899
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.899
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.899
CPEB3 Homo sapiens ENSG00000107864 I 0.899
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.899
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.899
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.899
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.899
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.899
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.899
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.899
CPEB3 Bos taurus ENSBTAG00000015450 I 0.899
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.899
CPEB4 Homo sapiens ENSG00000113742 D 0.899
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.899
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.899
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.899
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.899
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.899
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.899
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.899
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.899
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.899
CPEB3 Gallus gallus ENSGALG00000006912 I 0.899
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.899
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.899
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.899
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.896
GF10140 Drosophila ananassae FBgn0087181 I 0.895
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.895
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.892
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.892
CPEB3 Equus caballus ENSECAG00000000077 I 0.892
CPEB3 Sorex araneus ENSSARG00000001994 I 0.892
cpeb3 Danio rerio ENSDARG00000060103 I 0.892
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.892
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.892
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.891
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.891
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.891
GL20808 Drosophila persimilis FBgn0158403 I 0.887
GH16131 Drosophila grimshawi FBgn0123602 I 0.887
GG15051 Drosophila erecta FBgn0107305 I 0.887
GJ12289 Drosophila virilis FBgn0199538 I 0.887
GK17460 Drosophila willistoni FBgn0219459 I 0.887
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.887
orb2 Drosophila melanogaster FBgn0262573 D 0.887
GE21274 Drosophila yakuba FBgn0238542 I 0.887
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.887
GI12400 Drosophila mojavensis FBgn0135157 I 0.887
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.887
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.886
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.886
CPEB4 Gallus gallus ENSGALG00000014074 I 0.886
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.886
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.885
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.884
CPEB4 Sorex araneus ENSSARG00000013389 I 0.884
PHUM335520 Pediculus humanus PHUM335520 I 0.880
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.880
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.872
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.865
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.863
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.857
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.853
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.846
CPEB2 Sorex araneus ENSSARG00000010559 I 0.842
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.842
CPEB2 Danio rerio ENSDARG00000052604 I 0.821
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.812
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.804
AGAP002296 Anopheles gambiae AGAP002296 I 0.800
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.793
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.793
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.791
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.785
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.768
111676 Helobdella robusta 111676 I 0.743
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.736
AAEL012065 Aedes aegypti AAEL012065 I 0.726
79994 Helobdella robusta 79994 I 0.726
69117 Helobdella robusta 69117 N 0.711
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.710
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.710
cpeb4 Xenopus tropicalis ENSXETG00000012731 I 0.706
CPEB4 Tetraodon nigroviridis ENSTNIG00000018221 I 0.703