cassava512.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava512.valid.m1 T49431_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava512.valid.m1 RRM 157 227
cassava512.valid.m1 RRM 251 314

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30147.m013835 Ricinus communis 30147.m013835 N 0.873
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.810
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.775
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.838
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.754
BGIOSIBCE028840 Oryza indica BGIOSIBCE028840 N 0.711
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.761
cassava30233.valid.m1 Manihot esculenta cassava30233.valid.m1 N 0.894
cassava511.valid.m1 Manihot esculenta cassava511.valid.m1 N 0.951
CP31B Arabidopsis thaliana AT5G50250-TAIR-G N 0.761
Cucsa.196330 Cucumis sativus Cucsa.196330 N 0.810
Glyma04g36420.1 Glycine max Glyma04g36420.1 N 0.803
Glyma05g02800.1 Glycine max Glyma05g02800.1 N 0.761
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.817
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.775
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.775
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.000
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.803
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.824
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 0.711
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.775
MDP0000218595 Malus x domestica MDP0000218595 N 0.796
MDP0000224531 Malus x domestica MDP0000224531 N 0.707
MDP0000299693 Malus x domestica MDP0000299693 N 0.774
MDP0000528470 Malus x domestica MDP0000528470 N 0.800
MDP0000919119 Malus x domestica MDP0000919119 N 0.796
mgf001484m Mimulus guttatus mgf001484m N 0.768
mgf008267m Mimulus guttatus mgf008267m N 0.761
mgf009747m Mimulus guttatus mgf009747m N 0.704
PK05280.1 Cannabis sativa PK05280.1 N 0.817
PK28733.1 Cannabis sativa PK28733.1 N 0.746
ppa008913m Prunus persica ppa008913m N 0.789
ppa009286m Prunus persica ppa009286m N 0.775
SB02G011330 Sorghum bicolor Sb02g011330 N 0.775
XM_002865734.1 Arabidopsis lyrata scaffold_801433.1 N 0.796
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.824