Glyma05g02800.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma05g02800.1 T52658_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma05g02800.1 RRM 119 189
Glyma05g02800.1 RRM 216 286

Links

Other RRM family RBPs
Other Glycine max RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.937
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.817
cassava30233.valid.m1 Manihot esculenta cassava30233.valid.m1 N 0.810
cassava511.valid.m1 Manihot esculenta cassava511.valid.m1 N 0.803
30147.m013835 Ricinus communis 30147.m013835 N 0.803
PK05280.1 Cannabis sativa PK05280.1 N 0.789
Cucsa.196330 Cucumis sativus Cucsa.196330 N 0.789
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.789
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.782
chr4.CM0173.30.nd Lotus japonicus chr4.CM0173.30.nd N 0.782
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.775
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.775
XM_002865734.1 Arabidopsis lyrata scaffold_801433.1 N 0.775
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.775
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.768
ppa009286m Prunus persica ppa009286m N 0.768
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.768
SB02G011330 Sorghum bicolor Sb02g011330 N 0.768
cassava512.valid.m1 Manihot esculenta cassava512.valid.m1 N 0.761
ppa008913m Prunus persica ppa008913m N 0.754
mgf008267m Mimulus guttatus mgf008267m N 0.754
MDP0000218595 Malus x domestica MDP0000218595 N 0.754
MDP0000919119 Malus x domestica MDP0000919119 N 0.754
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.746
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.746
PK28733.1 Cannabis sativa PK28733.1 N 0.739
CP31B Arabidopsis thaliana AT5G50250-TAIR-G N 0.739
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.732
MDP0000299693 Malus x domestica MDP0000299693 N 0.732
MDP0000296631 Malus x domestica MDP0000296631 N 0.732
Glyma04g36420.1 Glycine max Glyma04g36420.1 N 0.725
mgf001484m Mimulus guttatus mgf001484m N 0.718
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.718
SB07G024400 Sorghum bicolor Sb07g024400 N 0.711
MDP0000528470 Malus x domestica MDP0000528470 N 0.711
mgf009747m Mimulus guttatus mgf009747m N 0.704