Cucsa.185730 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.185730 T49582_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.185730.1 RRM 126 196
Cucsa.185730.1 RRM 206 275
Cucsa.185730.1 RRM 300 370
Cucsa.185730.2 RRM 126 196
Cucsa.185730.2 RRM 206 275
Cucsa.185730.2 RRM 300 370

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28629.m000549 Ricinus communis 28629.m000549 N 0.728
30055.m001569 Ricinus communis 30055.m001569 N 0.840
B9HC85_POPTR Populus trichocarpa POPTR_0006s22890 N 0.741
B9HQ12_POPTR Populus trichocarpa POPTR_0009s16490 N 0.792
B9IIU5_POPTR Populus trichocarpa POPTR_0016s08010 N 0.751
B9MYW2_POPTR Populus trichocarpa POPTR_0004s21210 N 0.759
cassava19191.valid.m1 Manihot esculenta cassava19191.valid.m1 N 0.750
cassava19192.valid.m1 Manihot esculenta cassava19192.valid.m1 N 0.745
cassava21692.m1 Manihot esculenta cassava21692.m1 N 0.750
cassava21693.m1 Manihot esculenta cassava21693.m1 N 0.750
cassava29630.valid.m1 Manihot esculenta cassava29630.valid.m1 N 0.765
chr1.CM0010.50.nc Lotus japonicus chr1.CM0010.50.nc N 0.723
Glyma03g35450.1 Glycine max Glyma03g35450.1 N 0.756
Glyma11g18940.1 Glycine max Glyma11g18940.1 N 0.840
Glyma12g09530.1 Glycine max Glyma12g09530.1 N 0.840
GSVIVG00033857001 Vitis vinifera GSVIVG00033857001 N 0.729
GSVIVG00036119001 Vitis vinifera GSVIVG00036119001 N 0.883
MDP0000181657 Malus x domestica MDP0000181657 N 0.789
MDP0000250854 Malus x domestica MDP0000250854 N 0.784
MDP0000851531 Malus x domestica MDP0000851531 N 0.793
Medtr7g009690 Medicago truncatula Medtr7g009690 N 0.788
Medtr7g127590 Medicago truncatula Medtr7g127590 N 0.714
mgf001576m Mimulus guttatus mgf001576m N 0.784
PDK_20s1316982g002 Phoenix dactylifera PDK_20s1316982g002 N 0.736
PK04414.1 Cannabis sativa PK04414.1 N 0.756
PK05405.1 Cannabis sativa PK05405.1 N 0.864
ppa004677m Prunus persica ppa004677m N 0.808
ppa004785m Prunus persica ppa004785m N 0.779