estExt_Genewise1Plus.C_110324 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_110324 T51356_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_110324 RRM 38 108

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
145168 Helobdella robusta 145168 N 0.746
AAEL002461 Aedes aegypti AAEL002461 N 0.732
AAH56844 Xenopus laevis AAH56844 N 0.716
AGAP000977 Anopheles gambiae AGAP000977 N 0.761
Ame_R006638 Ailuropoda melanoleuca Ame_R006638 N 0.819
An07g05140 Aspergillus niger CADANGAG00005786 N 0.746
ANIA_04665 Aspergillus nidulans CADANIAG00005768 N 0.732
Aqu1.200557 Amphimedon queenslandica Aqu1.200557 N 0.775
Aqu1.228439 Amphimedon queenslandica Aqu1.228439 N 0.761
ATEG_05773 Aspergillus terreus CADATEAG00002943 N 0.718
BC1G_09608 Botrytis cinerea BC1G_09608 N 0.732
BDBG_01138 Blastomyces dermatitidis BDBG_01138 N 0.718
Bm1_02690 Brugia malayi Bm1_02690 N 0.704
C30B5.4 Caenorhabditis elegans C30B5.4 N 0.732
CBG02589 Caenorhabditis briggsae CBG02589 N 0.718
CBN24057 Caenorhabditis brenneri CBN24057 N 0.704
CC1G_01457 Coprinopsis cinerea CC1G_01457 N 0.704
CG10466 Drosophila melanogaster FBgn0032822 N 0.761
CIMG_06780 Coccidioides immitis CIMG_06780 N 0.732
CPSG_07351 Coccidioides posadasii CPSG_07351 N 0.732
CRE26315 Caenorhabditis remanei CRE26315 N 0.704
DGIL_AUG5s13597g2t1 Acyrtosiphon pisum DGIL_AUG5s13597g2t1 N 0.775
ENSCSAVG00000001047 Ciona savignyi ENSCSAVG00000001047 N 0.732
ENSGGOG00000016146 Gorilla gorilla ENSGGOG00000016146 N 0.806
ENSGGOG00000026106 Gorilla gorilla ENSGGOG00000026106 N 0.778
ENSLAFG00000028277 Loxodonta africana ENSLAFG00000028277 N 0.775
ENSMLUG00000010298 Myotis lucifugus ENSMLUG00000010298 N 0.819
ENSMLUG00000017095 Myotis lucifugus ENSMLUG00000017095 N 0.831
ENSMMUG00000001001 Macaca mulatta ENSMMUG00000001001 N 0.722
ENSMODG00000011981 Monodelphis domestica ENSMODG00000011981 N 0.718
ENSMODG00000019800 Monodelphis domestica ENSMODG00000019800 N 0.806
ENSOCUG00000020937 Oryctolagus cuniculus ENSOCUG00000020937 N 0.703
ENSOGAG00000006237 Otolemur garnettii ENSOGAG00000006237 N 0.819
ENSOGAG00000009060 Otolemur garnettii ENSOGAG00000009060 N 0.764
ENSPPYG00000020717 Pongo pygmaeus ENSPPYG00000020717 N 0.778
estExt_fgenesh1_pg.C_30395 Batrachochytrium dendrobatidis estExt_fgenesh1_pg.C_30395 N 0.704
estExt_fgenesh1_pg.C_410012 Monosiga brevicollis estExt_fgenesh1_pg.C_410012 N 0.704
estExt_fgenesh2_kg.C_140042 Agaricus bisporus estExt_fgenesh2_kg.C_140042 N 0.704
estExt_fgenesh2_kg.C_42587 Serpula lacrymans estExt_fgenesh2_kg.C_42587 N 0.718
estExt_fgenesh3_pg.C_500008 Postia placenta estExt_fgenesh3_pg.C_500008 N 0.761
fgenesh1_pg.00771_#_290 Aspergillus carbonarius fgenesh1_pg.00771_#_290 N 0.718
fgenesh2_pg.C_sca_10000115 Lottia gigantea fgenesh2_pg.C_sca_10000115 N 0.803
GA10331-RA Drosophila pseudoobscura FBgn0070389 N 0.817
GD24233 Drosophila simulans FBgn0195582 N 0.761
GE13281 Drosophila yakuba FBgn0230967 N 0.761
GF14433 Drosophila ananassae FBgn0091460 N 0.789
GG21207 Drosophila erecta FBgn0113387 N 0.775
GH13830 Drosophila grimshawi FBgn0121306 N 0.789
GI11259 Drosophila mojavensis FBgn0134020 N 0.831
GI11260 Drosophila mojavensis FBgn0134021 N 0.831
GI20215 Drosophila mojavensis FBgn0142951 N 0.831
GJ13600 Drosophila virilis FBgn0200822 N 0.817
GK14925 Drosophila willistoni FBgn0216930 N 0.789
GL26176 Drosophila persimilis FBgn0163758 N 0.817
GM17378 Drosophila sechellia FBgn0172288 N 0.761
GSTUMT00000089001 Tuber melanosporum GSTUMT00000089001 N 0.704
gw.130.169.1 Nematostella vectensis gw.130.169.1 N 0.732
gw1.1.2244.1 Trichoplax adhaerens gw1.1.2244.1 N 0.704
gw1.1.2440.1 Mucor circinelloides gw1.1.2440.1 N 0.704
gw1.16.255.1 Trichoderma reesei gw1.16.255.1 N 0.704
gw1.39.43.1 Selaginella moellendorfii gw1.39.43.1 N 0.718
gw1.4.2036.1 Heterobasidion annosum gw1.4.2036.1 N 0.704
gw1.462.53.1 Capitella teleta gw1.462.53.1 N 0.746
gwh2.2.841.1 Phanerochaete chrysosporium gwh2.2.841.1 N 0.732
LOC100058600 Equus caballus ENSECAG00000008257 N 0.819
LOC100388331 Callithrix jacchus ENSCJAG00000002436 N 0.819
LOC534630 Bos taurus ENSBTAG00000006252 N 0.775
LOC613705 Bos taurus ENSBTAG00000014771 N 0.775
nasonia_NCBI_hmm382923 Nasonia vitripennis nasonia_NCBI_hmm382923 N 0.789
NFIA_078760 Neosartorya fischeri CADNFIAG00007376 N 0.704
PABG_03870 Paracoccidioides brasiliensis PABG_03870 N 0.704
Pc22g16450 Penicillium chrysogenum Pc22g16450 N 0.746
PHUM617480 Pediculus humanus PHUM617480 N 0.761
PMAA_079770 Penicillium marneffei PMAA_079770 N 0.718
PredSwiss_CON1238.1 Pneumocystis carinii PredSwiss_CON1238.1 N 0.817
RBMX2 Macropus eugenii ENSMEUG00000010913 N 0.819
RBMX2 Loxodonta africana ENSLAFG00000017625 N 0.784
RBMX2 Microcebus murinus ENSMICG00000015139 N 0.819
RBMX2 Erinaceus europaeus ENSEEUG00000000839 N 0.764
RBMX2 Gorilla gorilla ENSGGOG00000023687 N 0.819
RBMX2 Echinops telfairi ENSETEG00000001763 N 0.819
RBMX2 Gallus gallus ENSGALG00000004025 N 0.792
rbmx2 Danio rerio ENSDARG00000044380 N 0.845
RBMX2 Gasterosteus aculeatus ENSGACG00000001855 N 0.789
RBMX2 Spermophilus tridecemlineatus ENSSTOG00000015391 N 0.792
RBMX2 Cavia porcellus ENSCPOG00000006640 N 0.806
RBMX2 Procavia capensis ENSPCAG00000012903 N 0.792
RBMX2 Anolis carolinensis ENSACAG00000008819 N 0.792
RBMX2 Meleagris gallopavo ENSMGAG00000001801 N 0.764
RBMX2 Tursiops truncatus ENSTTRG00000016210 N 0.819
RBMX2 Tarsius syrichta ENSTSYG00000010611 N 0.803
RBMX2 Takifugu rubripes ENSTRUG00000001699 N 0.845
RBMX2 Tetraodon nigroviridis ENSTNIG00000007672 N 0.859
RBMX2 Sorex araneus ENSSARG00000007350 N 0.803
RBMX2 Pteropus vampyrus ENSPVAG00000004425 N 0.819
RBMX2 Oryzias latipes ENSORLG00000013183 N 0.775
RBMX2 Oryctolagus cuniculus ENSOCUG00000011809 N 0.808
RBMX2 Ornithorhynchus anatinus ENSOANG00000001362 N 0.730
RBMX2 Macaca mulatta ENSMMUG00000008389 N 0.819
Rbmx2 Rattus norvegicus ENSRNOG00000007371 N 0.806
RBMX2 Canis familiaris ENSCAFG00000018770 N 0.797
RBMX2 Homo sapiens ENSG00000134597 N 0.819
Rbmx2 Mus musculus ENSMUSG00000031107 N 0.806
SS1G_03313 Sclerotinia sclerotiorum SS1G_03313 N 0.732
UREG_03685 Uncinocarpus reesii UREG_03685 N 0.718
WUBG_13107 Wuchereria bancrofti WUBG_13107 N 0.704
XM_001377711.1 Monodelphis domestica ENSMODG00000012002 N 0.806
XP_001110036.1 Macaca mulatta ENSMMUG00000020845 N 0.833
XP_001180915.1 Strongylocentrotus purpuratus XP_001180915.1 N 0.775
XP_002164481.1 Hydra magnipapillata XP_002164481.1 N 0.761
XP_791635.2 Strongylocentrotus purpuratus XP_791635.2 N 0.775
XR_023755.1 Pan troglodytes ENSPTRG00000022269 N 0.778