CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM551010
(
Pediculus humanus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
PHUM551010
T60735_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.947
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM551010-PA
S1
12
87
YPEVDDVVMVNVRSIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKDKGYIDLSKR
Links
Other
S1
family RBPs
Other
Pediculus humanus
RBPs
257 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH89292
Xenopus laevis
AAH89292
N
0.000
Ame_R017029
Ailuropoda melanoleuca
Ame_R017029
N
0.000
ENSCPOG00000022216
Cavia porcellus
ENSCPOG00000022216
N
0.000
ENSPPYG00000017121
Pongo pygmaeus
ENSPPYG00000017121
N
0.000
LOC100061852
Equus caballus
ENSECAG00000005540
N
0.000
LOC100390484
Callithrix jacchus
ENSCJAG00000012631
N
0.000
Q6JDJ9_CANFA
Canis familiaris
ENSCAFG00000000570
N
0.000
Rbm16
Rattus norvegicus
ENSRNOG00000016919
N
0.000
RBM16
Taeniopygia guttata
ENSTGUG00000011151
N
0.000
RBM16
Gallus gallus
ENSGALG00000013635
N
0.000
rbm16
Xenopus tropicalis
ENSXETG00000013132
N
0.000
SCAF8
Takifugu rubripes
ENSTRUG00000009243
N
0.000
SCAF8
Vicugna pacos
ENSVPAG00000012465
N
0.000
SCAF8
Sus scrofa
ENSSSCG00000004070
N
0.000
SCAF8
Pteropus vampyrus
ENSPVAG00000005582
N
0.000
SCAF8
Pan troglodytes
ENSPTRG00000018727
N
0.000
SCAF8
Tetraodon nigroviridis
ENSTNIG00000016885
N
0.000
SCAF8
Oryzias latipes
ENSORLG00000017358
N
0.000
SCAF8
Ochotona princeps
ENSOPRG00000018413
N
0.000
SCAF8
Danio rerio
ENSDARG00000074786
N
0.000
SCAF8
Homo sapiens
ENSG00000213079
N
0.000
SCAF8
Gasterosteus aculeatus
ENSGACG00000006909
N
0.000
SCAF8
Gorilla gorilla
ENSGGOG00000008645
N
0.000
SCAF8
Loxodonta africana
ENSLAFG00000000022
N
0.000
SCAF8
Meleagris gallopavo
ENSMGAG00000012762
N
0.000
SCAF8
Macaca mulatta
ENSMMUG00000015163
N
0.000
SCAF8
Monodelphis domestica
ENSMODG00000008301
N
0.000
Scaf8
Mus musculus
ENSMUSG00000046201
N
0.000
SCAF8
Oryctolagus cuniculus
ENSOCUG00000026063
N
0.000
SCAF8
Anolis carolinensis
ENSACAG00000005282
N
0.000