CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_Genewise1Plus.C_80350
(
Agaricus bisporus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
estExt_Genewise1Plus.C_80350
T61534_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.776
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_80350
S1
8
83
YPEVDELVMVQVRQIAEMGAYVKLLEYDNTEGMILLSELSRRRIRSVQKLIRIGRNEVVVVLRVDKEKGYIDLSKR
Links
Other
S1
family RBPs
Other
Agaricus bisporus
RBPs
262 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB03390.1
Alternaria brassicicola
AB03390.1
N
0.000
estExt_fgenesh1_pg.C_280027
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_280027
N
0.000
PTRG_04762
Pyrenophora tritici repentis
PTRG_04762
N
0.000
SNOG_11538
Stagonospora nodorum
SNOG_11538
N
0.000