MDP0000243086 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000243086 T01102_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000243086 CCCH ZF 229 250
MDP0000243086 RRM 372 431

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.000
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.000
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.000
estExt_fgenesh2_kg.C_20664 Agaricus bisporus estExt_fgenesh2_kg.C_20664 N 0.000
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.000
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.000
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.000
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.000
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.000
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.000
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.000
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.000
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.000
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.000
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.000
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.000
CAOG_06930 Capsaspora owczarzaki CAOG_06930 N 0.000
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.000
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.000
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.000
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.000
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.000
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.000
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.000
ncbp2 Danio rerio ENSDARG00000014898 N 0.000
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.000
GF16759 Drosophila ananassae FBgn0093780 N 0.000
GG22670 Drosophila erecta FBgn0114835 N 0.000
GH15101 Drosophila grimshawi FBgn0122576 N 0.000
Cbp20 Drosophila melanogaster FBgn0022943 N 0.000
GI23717 Drosophila mojavensis FBgn0146442 N 0.000
GL12592 Drosophila persimilis FBgn0150198 N 0.000
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.000
GM15280 Drosophila sechellia FBgn0170200 N 0.000
GD19204 Drosophila simulans FBgn0190709 N 0.000
GJ23276 Drosophila virilis FBgn0210378 N 0.000
GJ18756 Drosophila virilis FBgn0205908 N 0.000
GK11244 Drosophila willistoni FBgn0213255 N 0.000
GE25514 Drosophila yakuba FBgn0242580 N 0.000
NCBP2 Equus caballus ENSECAG00000016153 N 0.000
NCBP2 Gallus gallus ENSGALG00000006843 N 0.000
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.000
91084 Helobdella robusta 91084 N 0.000
NCBP2 Homo sapiens ENSG00000114503 N 0.000
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.000
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.000
estExt_Genewise1_worm.C_60324 Laccaria bicolor estExt_Genewise1_worm.C_60324 N 0.000
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.000
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.000
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.000
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.000
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.000
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.000
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.000
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.000
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.000
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.000
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.000
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.000
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.000
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.000
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.000
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.000
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.000
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.000
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.000
NCU00210 Neurospora crassa NCU00210 N 0.000
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.000
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.000
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.000
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.000
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.000
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.000
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.000
PHUM535920 Pediculus humanus PHUM535920 N 0.000
gwh2.1.1054.1 Phanerochaete chrysosporium gwh2.1.1054.1 N 0.000
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.000
gw1.1.2136.1 Pleurotus ostreatus gw1.1.2136.1 N 0.000
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.000
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.000
e_gw1.121.83.1 Postia placenta e_gw1.121.83.1 N 0.000
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.000
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.000
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.000
estExt_fgenesh2_kg.C_120041 Serpula lacrymans estExt_fgenesh2_kg.C_120041 N 0.000
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.000
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.000
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.000
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.000
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.000
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.000
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.000
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.000
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.000
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.000
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.000
CAA59259 Xenopus laevis CAA59259 N 0.000
AAH72902 Xenopus laevis AAH72902 N 0.000
2118330B Xenopus laevis 2118330B N 0.000
P52299 Xenopus laevis P52299 N 0.000
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.000