ncbp2 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000019384 T42922_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000041997 RRM 39 109

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

136 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH72902 Xenopus laevis AAH72902 N 0.944
P52299 Xenopus laevis P52299 N 0.944
2118330B Xenopus laevis 2118330B N 0.915
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.915
CAA59259 Xenopus laevis CAA59259 N 0.915
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.901
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.901
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.901
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.901
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.887
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.887
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.887
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.887
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.887
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.887
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.887
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.887
Pigz Rattus norvegicus ENSRNOG00000001746 N 0.887
NCBP2 Gallus gallus ENSGALG00000006843 N 0.887
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.887
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.887
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.887
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.887
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.887
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.887
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.887
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.887
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.887
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.887
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.887
NCBP2 Equus caballus ENSECAG00000016153 N 0.887
NCBP2 Homo sapiens ENSG00000114503 N 0.887
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.887
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.887
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.887
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.887
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.887
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.873
ncbp2 Danio rerio ENSDARG00000014898 N 0.873
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.873
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.873
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.873
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.873
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.873
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.873
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.873
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.873
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.859
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.859
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.859
GK11244 Drosophila willistoni FBgn0213255 N 0.845
GH15101 Drosophila grimshawi FBgn0122576 N 0.845
GJ23276 Drosophila virilis FBgn0210378 N 0.845
GF16759 Drosophila ananassae FBgn0093780 N 0.845
GI23717 Drosophila mojavensis FBgn0146442 N 0.845
GG22670 Drosophila erecta FBgn0114835 N 0.831
GL12592 Drosophila persimilis FBgn0150198 N 0.831
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.831
GM15280 Drosophila sechellia FBgn0170200 N 0.831
Cbp20 Drosophila melanogaster FBgn0022943 N 0.831
GD19204 Drosophila simulans FBgn0190709 N 0.831
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.831
GE25514 Drosophila yakuba FBgn0242580 N 0.831
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.817
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.817
91084 Helobdella robusta 91084 N 0.817
GJ18756 Drosophila virilis FBgn0205908 N 0.817
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.817
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.803
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.803
PHUM535920 Pediculus humanus PHUM535920 N 0.803
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.803
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.803
NCBP2 Sorex araneus ENSSARG00000014294 N 0.803
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.789
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.789
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.789
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.789
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.775
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.775
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.775
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.775
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.775
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.775
LOAG_03270 Loa loa LOAG_03270 N 0.775
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.775
Bm1_02935 Brugia malayi Bm1_02935 N 0.761
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.761
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.761
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.761
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.761
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.761
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.761
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.746
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.732
NCBP2L Equus caballus ENSECAG00000003478 N 0.732
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.732
NCBP2L Microcebus murinus ENSMICG00000016081 N 0.718
TERG_03424 Trichophyton rubrum TERG_03424 N 0.718
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.718
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.718
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.718
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.718
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.718
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.718
e_gw1.1.927.1 Trichoplax adhaerens e_gw1.1.927.1 N 0.718
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.718
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.718
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.718
MCYG_04468 Microsporum canis MCYG_04468 N 0.718
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.718
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.718
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.718
AFLA_046450 Aspergillus flavus CADAFLAG00005972 N 0.718
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.718
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.718
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.718
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.718
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.704
NCU00210 Neurospora crassa NCU00210 N 0.704
An12g03930 Aspergillus niger CADANGAG00009835 N 0.704
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.704
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.704
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.704
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.704
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.704
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.704
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.704
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.704
CAOG_06930 Capsaspora owczarzaki CAOG_06930 N 0.704
PMAA_070830 Penicillium marneffei PMAA_070830 N 0.704
Pc13g04070 Penicillium chrysogenum Pc13g04070 N 0.704
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.704
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.704
fgenesh1_pm.00772_#_82 Aspergillus carbonarius fgenesh1_pm.00772_#_82 N 0.704
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.704