0300010273 (Ostreococcus tauri)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 0300010273 T05857_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.722
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.722
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.722
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.722
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.722
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.722
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.722
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
0300010273 CCCH ZF 108 134
0300010273 CCCH ZF 146 170

Links

Other CCCH ZF family RBPs
Other Ostreococcus tauri RBPs

148 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.778
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.722
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.704
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.741
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.741
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.741
Aqu1.221345 Amphimedon queenslandica Aqu1.221345 I 0.704
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.722
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.704
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.741
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.741
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.704
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.704
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.741
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.704
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.722
ZFP36 Canis familiaris ENSCAFG00000005530 I 0.731
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.704
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.741
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.704
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.704
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.722
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.722
au.g10607_t1 Chlamydomonas reinhardtii au.g10607_t1 N 0.774
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.811
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.815
gw1.14.301.1 Coccomyxa C 169 gw1.14.301.1 N 0.808
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.796
CMA121C Cyanidioschyzon merolae CMA121C N 0.796
ZFP36 Danio rerio ENSDARG00000044395 I 0.704
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.741
zfp36l2 Danio rerio ENSDARG00000021806 I 0.704
zfp36l1b Danio rerio ENSDARG00000021443 I 0.722
zfp36l1a Danio rerio ENSDARG00000016154 I 0.704
gw1.42.93.1 Daphnia pulex gw1.42.93.1 N 0.704
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.704
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.778
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.741
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.704
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.722
EDI_287240 Entamoeba dispar EDI_287240 N 0.741
EHI_008770 Entamoeba histolytica EHI_008770 N 0.741
EIN_295900 Entamoeba invadens EIN_295900 N 0.759
LOC100063597 Equus caballus ENSECAG00000018860 I 0.704
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.722
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.704
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.704
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.741
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.722
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.741
ZFP36L1 Homo sapiens ENSG00000185650 I 0.704
ZFP36L2 Homo sapiens ENSG00000152518 I 0.741
ZFP36 Homo sapiens ENSG00000128016 D 0.722
XP_002159721.1 Hydra magnipapillata XP_002159721.1 N 0.704
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.796
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.741
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.704
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.741
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.741
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.704
gw1.57.55.1 Melampsora laricis populina gw1.57.55.1 N 0.769
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.741
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.865
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.755
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.741
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.704
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.722
Zfp36 Mus musculus ENSMUSG00000044786 I 0.722
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.741
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.704
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.722
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.741
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.704
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.741
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.722
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.704
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.722
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.722
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.704
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.704
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.942
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.923
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.741
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.704
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.722
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.778
estExt_fgenesh1_pg.C_3580026 Physcomitrella patens estExt_fgenesh1_pg.C_3580026 N 0.717
fgenesh1_pg.scaffold_257000036 Physcomitrella patens fgenesh1_pg.scaffold_257000036 N 0.736
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.778
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.778
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.704
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.722
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.741
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.796
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.704
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.722
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.722
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.704
PTTG_07763 Puccinia triticina PTTG_07763 N 0.796
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.741
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.704
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.722
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.759
RO3G_10992 Rhizopus oryzae RO3G_10992 N 0.731
RO3G_05094 Rhizopus oryzae RO3G_05094 N 0.731
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.796
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.815
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.815
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.778
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.704
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.741
fgenesh1_pg.C_scaffold_4000193 Sporobolomyces roseus fgenesh1_pg.C_scaffold_4000193 N 0.792
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.722
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.722
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.722
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.722
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.704
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.741
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.722
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.741
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.704
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.722
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.704
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.722
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.717
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.704
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.741
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.704
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.704
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.741
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.722
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.741
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.722
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.704
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.722
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.741
gw1.4.464.1 Volvox carteri gw1.4.464.1 N 0.727
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.722
BAC54909 Xenopus laevis BAC54909 I 0.704
AAI00163 Xenopus laevis AAI00163 I 0.704
AAH84221 Xenopus laevis AAH84221 I 0.704
AAH84197 Xenopus laevis AAH84197 I 0.704
AAH44086 Xenopus laevis AAH44086 I 0.722
AAD24209 Xenopus laevis AAD24209 I 0.704
AAD24208 Xenopus laevis AAD24208 I 0.704
Q805B4 Xenopus laevis Q805B4 I 0.704
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.704
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.722